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mirWIP specifications

Information


Unique identifier OMICS_02284
Name mirWIP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for mirWIP

mirWIP in publications

 (16)
PMCID: 5570370
PMID: 28837599
DOI: 10.1371/journal.pone.0183445

[…] ct method []. relative mirna levels were normalized to mir-2-5p, which was previously determined to have stable expression under various stress-induced conditions including heat shock []., mirwip was used as a primary tool for determining mirna/mrna target predictions []. for mirnas not yet listed in the mirwip database, targetscan was used to predicted mirna/mrna interactions []. […]

PMCID: 5242300
PMID: 27730721
DOI: 10.1111/acel.12539

[…] lifespan. consistent with lin‐28's role in dr response, let‐7(mg279) mutant partially suppressed dr induced longevity (fig. s4c, table s1). to search for the potential targets of let‐7, we used the mirwip target prediction package (hammell et al., ), which predicted both akt‐1 and akt‐2 as targets. let‐7 has the same seed region as mir‐84, mir‐241, and mir‐48 in c. elegans, and shen et al. […]

PMCID: 5173455
PMID: 27321180
DOI: 10.1038/onc.2016.222

[…] the control of particular genetic networks, therefore we sought to identify cel-mir-237-regulated γ-irradiation-response genes. we examined three targeting databases: miranda,, targetscanworm,, and mirwip, and identified 140 putative cel-mir-237 mrna targets(, left panel). to reduce false positives, we examined putative targets predicted by more than one algorithm, and identified 30 cel-mir-237 […]

PMCID: 4783514
PMID: 26400166
DOI: 10.1093/nar/gkv923

[…] we first carried out a computational search looking for mir-58 targets related to these two pathways. our quest in eight different databases (microcosm targets, microrna.org, target scan, pictar, mirwip, diana lab, rna22 and mirsom) rendered three putative mir-58 target genes belonging to the tgf-β sma/mab pathway: dbl-1, daf-4 and sma-6. genes daf-1 and daf-7 –apart from daf-4– […]

PMCID: 4574240
PMID: 26078280
DOI: 10.1534/genetics.115.179184

[…] apoptosis, and the extracellular matrix (reviewed in ; ). to better understand how mir-83 functions, we set out to determine its mrna targets and mirna coregulators in c. elegans. using mirwip (), we noticed an overlap between the predicted mrna targets for mir-83 and mir-34, another mirna that is conserved between nematodes and mammals (figure s1, table s1) (; ; ; ; ; ; ). mir-34 […]


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mirWIP institution(s)
Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA

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