MISA pipeline

MISA specifications

Information


Unique identifier OMICS_00110
Name MISA
Alternative names MIcroSAtellite identification tool, MISA-web
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Uwe Scholz <>
  • person_outline Thoma Thiel <>

Information


Unique identifier OMICS_00110
Name MISA
Alternative names MIcroSAtellite identification tool, MISA-web
Interface Web user interface
Restrictions to use None
Input data Accession number(s), sequence
Input format FASTA
Stability Stable
Maintained Yes

Maintainers


  • person_outline Uwe Scholz <>
  • person_outline Thoma Thiel <>

Publications for MIcroSAtellite identification tool

MISA citations

 (2)
2018
PMCID: 5766596

[…] one or more functional databases as its coding sequence (cds). coding regions of unigenes that could not be aligned with any of the functional databases were predicted by estscan v3.0.248. we used misa v1.049 to detect simple sequence repeats (ssrs; also known as microsatellites sequences) in our unigenes, and used gatk v3.4–050 to detect single nucleotide polymorphism (snp) variants among […]

2014
PMCID: 4114786

[…] of selected genes obtained from real-time rt-pcr and rna-seq data analysis was determined in r program., c. roseus transcriptome was screened for the presence of microsatellites (ssrs) using misa [61]. the number of repeating units considered in this study was, six for di-nucleotides, and five for tri-, tetra-, penta- and hexa-nucleotides. we did not consider mono-nucleotide repeats […]

MISA institution(s)
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany; KWS Saat SE, Einbeck, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
MISA funding source(s)
Supported by German Federal Ministry of Education and Research (BMBF) grant FKZ 0315954A in the frame of project TRITEX.

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