MISO specifications

Unique identifier:
OMICS_01337
Alternative names:
misopy, fastmiso
Interface:
Command line interface
Input data:
An annotation file and a RNA-Seq reads
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes
Name:
Mixture of Isoforms
Software type:
Package/Module
Restrictions to use:
None
Input format:
GFF+SAM
Programming languages:
C, Python
Computer skills:
Advanced
Requirements:
numpy, scipy, pysammatplotlib, samtools, bedtools

versioning

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MISO distribution

download

MISO support

Documentation

Maintainers

  • Chris Burge <>
  • Edoardo Airoldi <>
  • Yarden Katz <>

Additional information

http://miso.readthedocs.io/en/fastmiso/

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Publications

Institution(s)

Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; Department of Biology, MIT, Cambridge, MA, USA; Harvard-MIT Division of Health Sciences and Technology, Cambridge, MA, USA; Department of Statistics and FAS Center for Systems Biology, Harvard University, Cambridge, MA, USA; Department of Biological Engineering, MIT, Cambridge, MA, USA

Funding source(s)

Supported by grants from the US National Science Foundation and the US National Institutes of Health.

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