Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Missing data prediction software tools | Phylogenomics

The presence of missing data in large-scale phylogenomic datasets has negative effects on the phylogenetic inference process. One effect that is caused by alignments with missing per-gene or per-partition sequences is that the inferred phylogenies…
PhyloPars
Web

PhyloPars

Provides a method of combining any number of empirical observations (even…

Provides a method of combining any number of empirical observations (even incomplete) with the phylogenetic tree to obtain a complete set of estimates for missing parameter values. PhyloPars performs…

T-BAS
Web

T-BAS Tree-Based Alignment Selector

Visualizes phylogenetic relationships and metadata for Pezizomycotina,…

Visualizes phylogenetic relationships and metadata for Pezizomycotina, downloads alignments for six loci and performs placement of unknowns using either BLAST or phylogeny-based approaches in RAxML.…

ForeSeqs
Desktop

ForeSeqs Forecasing Sequences

Algorithms for correcting excessively long branch lengths induced by missing…

Algorithms for correcting excessively long branch lengths induced by missing data and methods for predicting/imputing missing sequence data. ForeSeqs was evaluated by systematically removing sequence…

PLCT
Desktop

PLCT Partially Labeled Coalescent Tree

Allows to determine reconciliation feasibility. PLCT aims to encode the set of…

Allows to determine reconciliation feasibility. PLCT aims to encode the set of species-specific loci that must be orthologous. It captures the constraints implied by the multiple loci and multiple…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.