The presence of missing data in large-scale phylogenomic datasets has negative effects on the phylogenetic inference process. One effect that is caused by alignments with missing per-gene or per-partition sequences is that the inferred phylogenies may exhibit extremely long…
Web app
PhyloPars PhyloPars

PhyloPars

Provides a method of combining any number of empirical observations (even…

Provides a method of combining any number of empirical observations (even incomplete) with the phylogenetic tree to obtain a complete set of estimates for missing parameter values. PhyloPars performs…

Web app
Tree-Based Alignment… Tree-Based Alignment Selector

T-BAS Tree-Based Alignment Selector

Visualizes phylogenetic relationships and metadata for Pezizomycotina,…

Visualizes phylogenetic relationships and metadata for Pezizomycotina, downloads alignments for six loci and performs placement of unknowns using either BLAST or phylogeny-based approaches in RAxML.…

Desktop app
Forecasing Sequences Forecasing Sequences

ForeSeqs Forecasing Sequences

Algorithms for correcting excessively long branch lengths induced by missing…

Algorithms for correcting excessively long branch lengths induced by missing data and methods for predicting/imputing missing sequence data. ForeSeqs was evaluated by systematically removing sequence…

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