MISTRAL pipeline

MISTRAL specifications

Information


Unique identifier OMICS_03678
Name MISTRAL
Alternative name Multiple STRuctural Alignment
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Multiple STRuctural Alignment

MISTRAL IN pipelines

 (3)
2015
PMCID: 4599027
PMID: 26449279
DOI: 10.1186/s12900-015-0046-0

[…] [59]): we selected 23 unique rna and dna ligases whose structure have the highest percentage of identity and the lowest root mean square deviation (rmsd), and performed a multiple structural alignment including dprnl. for subsequent computations, we used the alignment without expanding the gaps, meaning that inserted segments relative to dprnl are hidden. […]

2012
PMCID: 3273431
PMID: 22244187
DOI: 10.1186/1471-2148-12-4

[…] all model structures predicted here had been deposited in protein model database [86] under id numbers pm0077184-pm0077186 and pm0077307-pm0077312. structural alignment was performed using the mistral online server [87]. pymol [88] was used to visualize the structure and locate the positively selected sites., to estimate the differential expression of ixodes scapularis genes […]

2008
PMCID: 3235984
PMID: 18389302
DOI: 10.1007/s00239-008-9075-7

[…] modeled from structures of the eukaryotic proteasome and hslv. bph from thiobacillus denitrificans has 22% sequence identity to the structure of hslv. we built a multiple sequence alignment from a multiple structural alignment for each cluster using combinatorial extension (shindyalov and bourne 1998) and built a tree using maximum likelihood (fig. 2). this was done to increase the quality […]

MISTRAL institution(s)
SISSA, CNR-INFM Democritos and Italian Institute of Technology, Trieste, Italy

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