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MiTCR

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An open source software package aimed at extraction of information on repertoire of T-cell clones from Next Generation Sequencing (NGS) data.

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MiTCR classification

MiTCR specifications

Software type:: Package/Module
Restrictions to use:: None
Computer skills:: Advanced
Maintained:: Yes

Interface:: Command line interface
Operating system:: Unix/Linux
Stability:: Stable
Issue URL:: https://github.com/milaboratory/mitcr//issues

Credits

Publications

Publications contributions

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(Bolotin et al., 2013) MiTCR: software for T-cell receptor sequencing data analysis. Nat Methods.
PMID: 23892897

Link to literature

Methodology

(Heather et al., 2017) High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. Brief Bioinform.
PMID: 28077404

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