MITE Digger statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

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MITE Digger specifications

Information


Unique identifier OMICS_03534
Name MITE Digger
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MITE Digger

MITE Digger in publications

 (2)
PMCID: 5950925
PMID: 29659815
DOI: 10.1093/gbe/evy073

[…] cultivated crops and wild species and closely and more distantly related genomes. p-mite database contains mite annotations predicted using different mite detection softwares, including mite-hunter, mite digger, and rpsb. mite sequence coordinates were obtained with blastn (with options ungapped, max_target_seqs = 1, perc_identity = 100 and 100% sequence coverage) of each mite element sequence […]

PMCID: 3991616
PMID: 24747717
DOI: 10.1371/journal.pone.0094499

[…] role in silencing tes –. because of the well-defined mite boundaries including the tirs and tsd, de novo identification of mites has become possible using tools like must, rsbp, mak, mite-hunter and mite digger , –. in addition, previously annotated information for mite homologs has enabled homology-based mite identification with tools like censor at the repbase database and repeatmasker , , . […]


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MITE Digger institution(s)
Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada

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