MITE Digger specifications

Information


Unique identifier OMICS_03534
Name MITE Digger
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for MITE Digger

MITE Digger citation

library_books

Genome Wide Comparative Analysis of 20 Miniature Inverted Repeat Transposable Element Families in Brassica rapa and B. oleracea

2014
PLoS One
PMCID: 3991616
PMID: 24747717
DOI: 10.1371/journal.pone.0094499

[…] role in silencing TEs –. Because of the well-defined MITE boundaries including the TIRs and TSD, de novo identification of MITEs has become possible using tools like MUST, RSBP, MAK, MITE-Hunter and MITE Digger , –. In addition, previously annotated information for MITE homologs has enabled homology-based MITE identification with tools like CENSOR at the Repbase database and RepeatMasker , , . MI […]

MITE Digger institution(s)
Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada

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