MITE Digger specifications


Unique identifier OMICS_03534
Name MITE Digger
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for MITE Digger

MITE Digger citation


Genome Wide Comparative Analysis of 20 Miniature Inverted Repeat Transposable Element Families in Brassica rapa and B. oleracea

PLoS One
PMCID: 3991616
PMID: 24747717
DOI: 10.1371/journal.pone.0094499

[…] role in silencing TEs –. Because of the well-defined MITE boundaries including the TIRs and TSD, de novo identification of MITEs has become possible using tools like MUST, RSBP, MAK, MITE-Hunter and MITE Digger , –. In addition, previously annotated information for MITE homologs has enabled homology-based MITE identification with tools like CENSOR at the Repbase database and RepeatMasker , , . MI […]

MITE Digger institution(s)
Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada

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