MITObim specifications

Information


Unique identifier OMICS_13338
Name MITOchondrial Baiting and Iterative Mapping
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl, Python
License MIT License
Computer skills Advanced
Version 1.8
Stability Stable
Requirements GNU utilities, MIRA
Maintained Yes

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Maintainer


  • person_outline Christoph Hahn <>

MITObim article

MITObim citations

 (2)
2017
PMCID: 5662180

[…] quality of the data was performed using trimmomatic v0.33 [23] with the following settings: sliding window 4:20. minimum read length:100. mitogenomes were reconstructed by iterative mapping using mitobim v1.8 [24]. the complete mitogenome of corvus splendens was used as reference in the mapping., duplications in the region between the cytb gene and the 12s rrna gene have frequently […]

2016
PMCID: 4839110

[…] sequencing depth. here only genus and family level identifications were considered., mitochondrial genomes of p. f. femoralis were obtained by metagenomic assembly on one samples (blm5) using mitobim [49] under default parameters and the mitochondrial genome of the related p. melalophos (genbank: nc_008217) as reference. the genome was annotated using mitos [50] and further manually […]

MITObim institution(s)
Natural History Museum, University of Oslo, Oslo, Norway; Department for Human Nutrition and Health, DSM Nutritional Products Ltd, Kaiseraugst, Switzerland
MITObim funding source(s)
This work was supported by Internal funding of the Natural History Museum, University of Oslo, Norway.

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