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Mitochondrial DNA databases | Genome annotation

Mitochondrial DNA (mtDNA) exhibits extraordinary genetic and physical diversity across different eukaryotic lineages (Burger et al., 2003) and among different cell and tissue types (Kolesar et al., 2013). Despite the notable variations in structural…
VectorBase
Dataset

VectorBase

A National Institute of Allergy and Infectious Diseases supported…

A National Institute of Allergy and Infectious Diseases supported Bioinformatics Resource Center (BRC) for invertebrate vectors of human pathogens. VectorBase currently hosts the genomes of 35…

PODB
Dataset

PODB Plant Organelles DataBase

Provides access to information about plant organelles. PODB consists of six…

Provides access to information about plant organelles. PODB consists of six individual units; namely, the electron micrograph database, the perceptive organelles database, the organelles movie…

PeroxisomeDB
Dataset

PeroxisomeDB Peroxisome DataBase

Gathers information about peroxisomal genes. PeroxisomeDB provides a manually…

Gathers information about peroxisomal genes. PeroxisomeDB provides a manually curated repository which aims to index peroxisomal proteins and their related molecular function, metabolic pathway and…

ChloroMitoSSRDB
Dataset

ChloroMitoSSRDB

A comprehensive online database of all SSRs (Simple Sequence Repeats) or STRs…

A comprehensive online database of all SSRs (Simple Sequence Repeats) or STRs (Short Tandem Repeats) or Microsatellites from all sequenced Chloroplast and Mitochondrial genomes available so far…

MitoFish
Dataset

MitoFish Mitochondrial Genome Database of Fish

Provides precise mitogenomic annotations. MitoFish is an online resource that…

Provides precise mitogenomic annotations. MitoFish is an online resource that collects fish mitogenomic sequence data. It offers four main functions: species/taxonomy search, sequence similarity…

mtDB
Dataset

mtDB Human Mitochondrial Genome Database

A web-based database of human whole genome and complete coding region…

A web-based database of human whole genome and complete coding region sequences. mtDB is the only comprehensive online source for the data contained within it. This includes the sequences themselves…

DOGMA
Web

DOGMA Dual Organellar GenoMe Annotator

Allows user to extract sub-sequences of the genome (including intergenic…

Allows user to extract sub-sequences of the genome (including intergenic regions, introns, amino acid sequences of protein coding genes, etc.) for further analysis. DOGMA is a web-based annotation…

PhyloTree.org
Dataset

PhyloTree.org

Provides a phylogenetic tree of global human mitochondrial DNA (mtDNA)…

Provides a phylogenetic tree of global human mitochondrial DNA (mtDNA) variation, based on both coding- and control-region mutations, and including haplogroup nomenclature. PhyloTree.org is a…

MitoMiner
Dataset

MitoMiner

A freely accessible mitochondrial proteomics database. MitoMiner integrates…

A freely accessible mitochondrial proteomics database. MitoMiner integrates different types of subcellular localisation evidence with protein information from public resources, and so provides a…

MitoDrome
Dataset

MitoDrome

Annotates the complete set of Drosophila melanogaster nuclear genes encoding…

Annotates the complete set of Drosophila melanogaster nuclear genes encoding for mitochondrial proteins in order to contribute to their functional characterization.

MitoAge
Dataset

MitoAge

Delivers an extensive repository of mtDNA data integrated with longevity…

Delivers an extensive repository of mtDNA data integrated with longevity records and the results of the statistical and correlative analysis of the links between them. MitoAge contains tools offering…

HvrBase
Dataset

HvrBase

Focuses on aspects of population genetics and collects meta information like…

Focuses on aspects of population genetics and collects meta information like ethnic groups and spoken languages for each individual. HvrBase is a database for population genetics analysis which…

MitoPhAST
Desktop

MitoPhAST Mitogenome Phylogenetic Analysis of Sequences Tool

Identifies annotated protein-coding gene features, generates a maximum…

Identifies annotated protein-coding gene features, generates a maximum likelihood phylogenetic tree and reports various mitochondrial genes and sequence information in a table format. The recovered…

MSeqDR
Dataset

MSeqDR the Mitochondrial Disease Sequence Data Resource Consortium

A centralized and comprehensive genome and phenome bioinformatics resource…

A centralized and comprehensive genome and phenome bioinformatics resource built by the mitochondrial disease community. MSeqDR facilitates clinical diagnosis and research investigations of…

MamMiBase
Dataset

MamMiBase Mammalian Mitochondrial genomics Database

A database developed to assist the phylogeneticist user in retrieving…

A database developed to assist the phylogeneticist user in retrieving individual gene sequence alignments for genes in complete mammalian mitochondrial genomes.

MitoInteractome
Dataset

MitoInteractome Mitochondrial Protein Interactome Database

A web based portal containing information relevant to Mitochondrial Proteins.…

A web based portal containing information relevant to Mitochondrial Proteins. It also serves as a research tool for finding interacting partners and studying mitochondrial diseases. It has a…

MPIMP db
Dataset
OGRe
Dataset

OGRe Organellar Genome Retrieval

A searchable relational database which currently contains the complete…

A searchable relational database which currently contains the complete mitochondrial genome sequences of 1244 metazoan organisms.

MitoGenesisDB
Dataset

MitoGenesisDB

Focuses on the dynamic of mitochondrial protein formation through global mRNA…

Focuses on the dynamic of mitochondrial protein formation through global mRNA analyses.

MitoZoa
Dataset

MitoZoa

A specialized database collecting complete and nearly-complete (longer than 7…

A specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA entries of metazoan species, excluding Placozoa.

GOBASE
Dataset

GOBASE

A taxonomically broad organelle genome database that organizes and integrates…

A taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts.

Organelle DB
Dataset

Organelle DB

Provides an information resource cataloging eukaryotic proteins that are known…

Provides an information resource cataloging eukaryotic proteins that are known components of an organelle or major protein complex. Organelle DB is a web-accessible relational database that presents…

FMiR
Dataset

FMiR Fish Mitogenome Resource

A database of curated fish mitochondrial sequences and presently covers…

A database of curated fish mitochondrial sequences and presently covers mitogenome information of 1302 globally distributed fish species belonging to 297 families and 47 orders reported from…

YDPM database
Dataset
InterMitoBase
Dataset

InterMitoBase

An integrated platform providing high quality protein-protein interaction (PPI)…

An integrated platform providing high quality protein-protein interaction (PPI) data in human mitochondrion and useful tools to analysis PPI network. Currently there are 490 proteins locating in…

MitoSatPlant
Dataset

MitoSatPlant

Provides information about perfect, imperfect and compound Simple Sequence…

Provides information about perfect, imperfect and compound Simple Sequence Repeats (SSRs). MitoSatPlant is an online resource of plant mitochondrial SSRs (mtSSRs). Additionally, Polymerase Chain…

MITOSCISSOR
Desktop

MITOSCISSOR

A rapid method for parsing and formatting dozens of complete mitochondrial…

A rapid method for parsing and formatting dozens of complete mitochondrial genome sequences. With the aid of MITOSCISSOR, complete mitochondrial genome sequences of 103 species from Tetraodontiformes…

MitPred
Desktop
Web

MitPred

A web-server specifically trained to predict the proteins which are destined to…

A web-server specifically trained to predict the proteins which are destined to localize in mitochondria in yeast and animals particularly. The prediction is made on basis of either occurrence of…

PFMpred
Web

PFMpred

It is developed for predicting mitochondrial proteins of malaria parasite…

It is developed for predicting mitochondrial proteins of malaria parasite Plasmodium falciparum. This server allows user to submit multiple sequences in FASTA format for predicting Plasmodium…

MitoRes
Dataset

MitoRes

A comprehensive and reliable resource for massive extraction of sequences and…

A comprehensive and reliable resource for massive extraction of sequences and sub-sequences of nuclear genes and encoded products targeting mitochondria in metazoa. MitoRes has been developed for…

MitoData
Dataset

MitoData

A unique multi-national database holding clinical, biochemical and molecular…

A unique multi-national database holding clinical, biochemical and molecular genetic data on human mitochondrial diseases.

HMPDb
Dataset

HMPDb Human Mitochondrial Protein Database

Provides comprehensive data on mitochondrial and human nuclear encoded proteins…

Provides comprehensive data on mitochondrial and human nuclear encoded proteins involved in mitochondrial biogenesis and function.

Human DNA…
Dataset

Human DNA Polymerase Gamma Mutation Database

This database lists all known mutations in the coding region of the POLG gene…

This database lists all known mutations in the coding region of the POLG gene and describes the associated disease.

MitoDat
Dataset

MitoDat

A database dedicated to the nuclear genes specifying the enzymes, structural…

A database dedicated to the nuclear genes specifying the enzymes, structural proteins, and other proteins, many still not identified, involved in mitochondrial biogenesis and function.

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