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Mitochondrial DNA data processing software tools | Whole-genome sequencing analysis

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mtDNA-Server
Web

mtDNA-Server

A web server based on Hadoop, allowing to analyze human mitochondrial…

A web server based on Hadoop, allowing to analyze human mitochondrial next-generation sequencing (NGS) data. All aspects from sequence alignment of FASTQ raw data to final results including…

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fastMitoCalc
Desktop

fastMitoCalc

Estimates Mitochondrial DNA (mtDNA) copy number highly accurately using 0.1% of…

Estimates Mitochondrial DNA (mtDNA) copy number highly accurately using 0.1% of the genome. fastMitoCalc is an application that takes advantage of the indexing of sequencing alignment files, focusing…

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MToolBox
Web
Desktop

MToolBox

An effective workflow with customizable parameters and able to analyze multiple…

An effective workflow with customizable parameters and able to analyze multiple samples in a single run. MToolBox is the only tool that generates as output a VCF file, the standard format for…

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SG-ADVISER…
Web

SG-ADVISER mtDNA

Allows users to analyze, annotate and report human mitochondrial DNA variants…

Allows users to analyze, annotate and report human mitochondrial DNA variants from next-generation sequencing (NGS) data. SG-ADVISER mtDNA is a web server built on top of MToolBox, an automated…

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MitoSuite
Desktop

MitoSuite

Allows users to analyze data from high-throughput sequencing (HTS) of the human…

Allows users to analyze data from high-throughput sequencing (HTS) of the human mitochondrial genome. MitoSuite is a graphical tool that supports quality check of alignment data, variant annotation,…

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Mitochondrial…
Desktop

Mitochondrial Ontogenetic Phylogeny Estimation

Allows users to choose the ontogenetic processes to place in the ontogenetic…

Allows users to choose the ontogenetic processes to place in the ontogenetic phylogeny. mope is an useful solution to study the dynamics of cancer evolution, or heterogeneous progression in samples…

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MitoSeek
Desktop

MitoSeek

An open-source software tool that can reliably and easily extract mitochondrial…

An open-source software tool that can reliably and easily extract mitochondrial genome information from exome and whole genome sequencing data. MitoSeek evaluates mitochondrial genome alignment…

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mit-o-matic
Desktop

mit-o-matic

A tool designed to provide clinically relevant information distributed in…

A tool designed to provide clinically relevant information distributed in disparate resources for understanding and annotating human mitochondrial DNA variations. The pipeline has two components: a…

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mitoBench
Desktop

mitoBench

Provides a workbench to analyze mitochondrial data. mitoBench is a software…

Provides a workbench to analyze mitochondrial data. mitoBench is a software that includes an assortment of functionalities for managing information coupled to visualization tools.

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MitoBamAnnotato…
Web

MitoBamAnnotator

A simple web-based tool for analyzing heteroplasmy using sequences generated by…

A simple web-based tool for analyzing heteroplasmy using sequences generated by second generation sequencing technology, specifically designed for studying the functional potential of mtDNA…

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