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Try: RNA sequencing CRISPR Genomic databases DESeq

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GeSeq
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Generates high-quality annotations in a default mode using a curated reference gene set. GeSeq enables user to upload proprietary, most up to-date or novel feature-containing reference sets. This tool urges user to curate gene annotations that failed or are particularly tricky as well as tiny exons or rapidly evolving genes. It can show independent annotations by the best-matching reference sequences and its corresponding profile Hidden Markov Model (HMM) hit or third party tRNA annotators.
AGORA / Annotator for Genes of Organelle from the Reference sequence Analysis
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Serves as an organellar gene annotator that uses reference sequence similarity. AGORA is based on a BLAST search compared with a user-selected reference sequence. This software is user-optimized for selected genomes and organism categories. It offers an annotation feature for the functional genes in almost all mitochondrion and plastid genomes of eukaryotes, and for genome with an exon-intron structure within a gene or inverted repeat region.
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