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MitoDrome specifications

Information


Unique identifier OMICS_03351
Name MitoDrome
Restrictions to use None
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster

Maintainer


  • person_outline Marcella Attimonelli

Publication for MitoDrome

MitoDrome citations

 (3)
library_books

Analyses of Nuclearly Encoded Mitochondrial Genes Suggest Gene Duplication as a Mechanism for Resolving Intralocus Sexually Antagonistic Conflict in Drosophila

2010
Genome Biol Evol
PMCID: 2995371
PMID: 21037198
DOI: 10.1093/gbe/evq069

[…] lies, as described in the Materials and Methods. This leads to an estimate of 24% (123/512) of genes belonging to a gene family ().We also analyzed the congruence of our FlyMine GO retrieval with the MitoDrome database (). We observed that 94% of MitoDrome database (i.e., 271 genes) was included in our gene set. This result shows that our mitochondrial data set is congruent with the MitoDrome data […]

library_books

Contrasting patterns of selective constraints in nuclear encoded genes of the oxidative phosphorylation pathway in holometabolous insects and their possible role in hybrid breakdown in Nasonia

2010
Heredity
PMCID: 2823824
PMID: 20087391
DOI: 10.1038/hdy.2009.172

[…] For each nuclear encoded gene of the five OXPHOS complexes, we obtained the Drosophila melanogaster protein sequence from the MitoDrome database (; http://www2.ba.itb.cnr.it/MitoDrome/). These sequences were used as queries to search the Nasonia genome assembly 1.0 () using the program TBLASTN and applying the SEG filter for […]

library_books

The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis regulatory motif, a common destiny for gene duplicates

2007
BMC Evol Biol
PMCID: 2241641
PMID: 18315839
DOI: 10.1186/1471-2148-7-215

[…] BlastN and TBlastN [] searches of contigs, scaffolds and ESTs from FlyBase [] were performed using D. melanogaster OXPHOS CDSs and peptides listed in the MitoDrome database [] as queries to identify orthologous OXPHOS genes and their duplications in Drosophilidae and other insect genomes.Sequence sources: D. erecta, D. ananassae, D mojavensis, D. viril […]

Citations

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MitoDrome institution(s)
Dipartimento di Genetica e Anatomia Patologica, Università di Bari, Bari, Italy

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