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MITOPRED specifications

Information


Unique identifier OMICS_07282
Name MITOPRED
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publications for MITOPRED

MITOPRED citations

 (24)
library_books

Diversity and Evolutionary Analysis of Iron Containing (Type III) Alcohol Dehydrogenases in Eukaryotes

2016
PLoS One
PMCID: 5125639
PMID: 27893862
DOI: 10.1371/journal.pone.0166851

[…] metabolic activity, as well as in differentiation and embryonic developmental processes.Immunocytochemical staining reveals mitochondrial localization for mouse ADHFE1 []. Predictions performed with MITOPRED [] WoLF PSORT [], and PredSL [], suggest that all animal ADHFE1s are also mitochondrial (data not shown). These enzymes conserve both the NAD(P)+-binding site and an iron-binding motif (see F […]

library_books

Predicting Protein Subcellular Localization: Past, Present, and Future

2016
PMCID: 5187447
PMID: 15901249
DOI: 10.1016/S1672-0229(04)02027-3

[…] s, overall sequence properties (e.g. isoelectric points and surface composition), and mRNA expression levels . Their method is based on a Bayesian prediction model and was tested on the yeast genome. MITOPRED is a method specialized for predicting mitochondrial proteins, which is based on Pfam domains and amino acid composition .Several of the described methods are available as online prediction […]

call_split

Bioinformatic Indications That COPI and Clathrin Based Transport Systems Are Not Present in Chloroplasts: An Arabidopsis Model

2014
PLoS One
PMCID: 4138088
PMID: 25137124
DOI: 10.1371/journal.pone.0104423
call_split See protocol

[…] rotein database to retrieve their names and predict their subcellular localizations, applying 17 tools provided by the host website (http://aramemnon.uni-koeln.de): BaCelLo , ChloroP_v1.1 , iPSort , Mitopred , Mitoprot_v2 , MultiLoc , PA-SUB_v2.5 , PCLR_v0.9 , PProwler_v1.1 , PrediSi , Predotar_v1 , PredSL , SignalP_HMM_v3 , , SignalP_NN_v3 , SLP-Local , TargetP_v1 , , and WoLF PSort . Using thes […]

call_split

The Complexity of Vesicle Transport Factors in Plants Examined by Orthology Search

2014
PLoS One
PMCID: 4028247
PMID: 24844592
DOI: 10.1371/journal.pone.0097745
call_split See protocol

[…] For other plant species, experimental evidences for intracellular localization are largely absent. Thus, we selected YLoc, WoLF PSORT, TargetP, Predotar, MitoPred and ChloroP from SUBA3 localization predictor bundle, which enable the automation of the localization approach by submitting ≥2 sequences at once. The predictor YLoc and WoLF PSORT distingu […]

library_books

A Unique Mitochondrial Transcription Factor B Protein in Dictyostelium discoideum

2013
PLoS One
PMCID: 3724811
PMID: 23923009
DOI: 10.1371/journal.pone.0070614

[…] Mitochondrial targeting of Tfb1m was suggested by high probability scores obtained using the software programs Mitoprot (probability score: 0.71) and Mitopred (probability score: 0.85) . To confirm the localisation of Tfb1m, a fusion gene was created consisting of the 5′ end of tfb1m (846 bp), encoding the putative mitochondrial targeting signal, f […]

library_books

New Putative Chloroplast Vesicle Transport Components and Cargo Proteins Revealed Using a Bioinformatics Approach: An Arabidopsis Model

2013
PLoS One
PMCID: 3613420
PMID: 23573218
DOI: 10.1371/journal.pone.0059898

[…] ion, ARAMEMNON was used to predict subcellular localizations of proteins based on results collected from the following 17 prediction tools included in the ARAMEMNON: BaCelLo , ChloroP_v1.1 , iPSort , Mitopred , Mitoprot_v2 , MultiLoc , PA-SUB_v2.5 , PCLR_v0.9 , PProwler_v1.1 , PrediSi , Predotar_v1 , PredSL , SignalP_HMM_v3 , , SignalP_NN_v3 , SLP-Local , TargetP_v1 , and WoLF PSort . Using these […]

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MITOPRED institution(s)
San Diego Supercomputer Center, University of California at San Diego, La Jolla, CA, USA

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