MitoSeek pipeline

MitoSeek specifications


Unique identifier OMICS_05467
Name MitoSeek
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data MitoSeek can extract mitochondrial genome information directly from a BAM file and also perform mitochondrial genome assembly.
Operating system Unix/Linux
Computer skills Advanced
Version 1.3
Stability Stable
Maintained Yes


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  • person_outline Yan Guo <>

Publication for MitoSeek

MitoSeek IN pipeline

PMCID: 5827201
PMID: 29483551
DOI: 10.1038/s41598-018-21844-6

[…] ≥0.02 in allele fraction and the 99.999% confidence interval of the variant allele count under a binomial distribution did not overlap with the corresponding vaf in the normal. variants reported by mitoseek were further filtered for strand bias, in which variants were eliminated if they did not have ≥5 variant alleles called on each strand., in analyzing mutational processes in normal tissue, […]

MitoSeek institution(s)
Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, USA; Center for Human Genetics Research, Vanderbilt University, Nashville, TN, USA

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