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|Interface||Command line interface|
|Restrictions to use||None|
|Input data||MitoSeek can extract mitochondrial genome information directly from a BAM file and also perform mitochondrial genome assembly.|
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- person_outline Yan Guo
Publication for MitoSeek
Somatic Mitochondrial DNA Mutations in Diffuse Large B Cell Lymphoma
[…] The MitoSeek tool was revised (Supplementary Methods) and used to extract mitochondrial DNA reads from WGS BAM files of 40 tumour-normal pairs, convert the mitochondrial genome coordinates from the hg18 r […]
Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms
[…] s for whom conventional molecular testing had previously failed to produce a diagnosis. Such evaluations of mtDNA based on off-target data can be facilitated by dedicated bioinformatics tools such as MitoSeek, which extracts mitochondrial genome information from exome data and analyses associated mutations and structural variants ().Based on the potency of this method for expanding knowledge beyon […]
The mitochondrial genetic landscape in neuroblastoma from tumor initiation to relapse
[…] Whole exome sequencing data was filtered for mitochondrial sequences and screened for mt variants using the MitoSeek tool  and the revised Cambridge Reference Sequence. Thresholds were set to a coverage of > 50 reads per base. The mean coverage of mitochondrial variants was 212. An abundance of at least 2 […]
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