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MitPred specifications

Information


Unique identifier OMICS_06616
Name MitPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06616
Name MitPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MitPred

MitPred in publications

 (3)
PMCID: 2995047
PMID: 20660476
DOI: 10.1093/nar/gkq618

[…] proteins., to date, a number of computational methods have been developed to predict mitochondrial proteins. these methods use different protein features, such as amino acid composition [aac; e.g. mitpred (), predotar (), psortii (), ploc (), nnpsl ()], physicochemical properties [e.g. predotar (), proteome analyst (), locsvmpsi (), eslpred (), loctree ()], n-terminal signal peptides [e.g. […]

PMCID: 2632991
PMID: 19152693
DOI: 10.1186/1471-2105-10-22

[…] dataset. in this work we used the non-redundant database of 10372 eukaryotic proteins obtained from guda et al, 2004 []. this dataset has been used earlier for developing mitopred [] and mitpred []. originally these sequences were extracted from swiss-prot release 40.41 . it consists of proteins having experimentally determined subcellular locations (cytoplasm = 1712, nucleus = 2710, […]

PMCID: 2220007
PMID: 18047679
DOI: 10.1186/1471-2105-8-466

[…] cutoff is 60%, mitopred yielded its best mcc of 0.7816. however, our mcc is 0.8587 and higher than that of mitopred by 0.0771., note: parameters of table 2 are used for our method., furthermore, mitpred is a web-server specifically trained to predict the proteins which are destined to localized in mitochondria in yeast and animals []. we applied mitpred to both plant and nonplant proteins […]


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MitPred institution(s)
Institute of Microbial Technology, Chandigarh, India

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