miTRATA specifications

Information


Unique identifier OMICS_10241
Name miTRATA
Alternative name microRNA Truncation and Tailing Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input data or parameters such as the small RNA sequence files, the genome of interest (the Bowtie index to be used), the list of miRNAs to analyze, and their contact information.
Output data The results page displays the output, including a summary of truncation and tailing results in a tabular form, the graphed data, and links to download the results.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Meyers B. C. <>

Information


Unique identifier OMICS_10241
Name miTRATA
Alternative name microRNA Truncation and Tailing Analysis
Interface Web user interface
Restrictions to use None
Input data The input data or parameters such as the small RNA sequence files, the genome of interest (the Bowtie index to be used), the list of miRNAs to analyze, and their contact information.
Output data The results page displays the output, including a summary of truncation and tailing results in a tabular form, the graphed data, and links to download the results.
Programming languages PHP, Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Meyers B. C. <>

Publication for microRNA Truncation and Tailing Analysis

miTRATA institution(s)
Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA; Delaware Biotechnology Institute, University of Delaware Newark, DE, USA; Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA
miTRATA funding source(s)
This work was supported by the National Institute of Food and Agriculture, U.S. Department of Agriculture, under Agreement No. 2012-67013-19396.

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