A universal framework that processes big immunome data from raw sequences to quantitated clonotypes. MiXCR efficiently handles paired- and single-end reads, considers sequence quality, corrects PCR errors and identifies germline hypermutations. The software supports both partial- and full-length profiling and employs all available RNA or DNA information, including sequences upstream of V and downstream of J gene segments.

User report

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MiXCR forum

No open topic.

MiXCR versioning

No versioning.

MiXCR classification

  • Animals
  • Fungi
  • Plants
  • Protists

MiXCR specifications

Software type:
Package
Restrictions to use:
Academic users only
Output data:
VDJ alignments file, assembled clonotypes
Operating system:
Unix/Linux, Mac OS, Windows
License:
Commercial
Version:
MiXCR version 1.1
Interface:
Command line interface
Input data:
Raw FASTQ
Biological technology:
Illumina, Roche
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable
Issue URL:
https://github.com/milaboratory/mixcr//issues

MiXCR support

Maintainer

  • Bolotin Dmitry <>

Credits

Publications

Institution(s)

Shemyakin-Ovchinnikov Institute of bioorganic chemistry RAS, Moscow, Russia; Pirogov Russian National Research Medical University, Moscow, Russia; Central European Institute of Technology, Masaryk University, Brno, Czech Republic

Link to literature

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