A universal framework that processes big immunome data from raw sequences to quantitated clonotypes. MiXCR efficiently handles paired- and single-end reads, considers sequence quality, corrects PCR errors and identifies germline hypermutations. The software supports both partial- and full-length profiling and employs all available RNA or DNA information, including sequences upstream of V and downstream of J gene segments.

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MiXCR forum

No open topic.

MiXCR versioning

No versioning.

MiXCR classification

  • Animals
  • Fungi
  • Plants
  • Protists

MiXCR specifications

Software type:
Package
Restrictions to use:
Academic users only
Output data:
VDJ alignments file, assembled clonotypes
Operating system:
Unix/Linux, Mac OS, Windows
License:
Commercial
Version:
MiXCR version 1.1
Interface:
Command line interface
Input data:
Raw FASTQ
Biological technology:
Illumina, Roche
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable

MiXCR support

Documentation

Maintainer

Credits

Publications

  • (Bolotin et al., 2015) MiXCR: software for comprehensive adaptive immunity profiling. Nature methods.
    PMID: 25924071

Link to literature

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