MixHMM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MixHMM
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Tool usage distribution map

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MixHMM specifications

Information


Unique identifier OMICS_02569
Name MixHMM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for MixHMM

MixHMM citations

 (2)
library_books

Copy number variation analysis in the context of electronic medical records and large scale genomics consortium efforts

2014
Front Genet
PMCID: 3957100
PMID: 24672537
DOI: 10.3389/fgene.2014.00051

[…] Illumina – the two primary purveyors of SNP arrays – offer free software packages for CNV analysis. Independently developed toolsets are also available. These include circular binding segmentation () MixHMM (), GADA (), PennCNV (Figure ; ), and ParseCNV (; the latter two were developed by eMERGE researchers and are widely used). […]

library_books

Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent of Origin based Detection (POD) method

2013
BMC Genomics
PMCID: 3680018
PMID: 23724825
DOI: 10.1186/1471-2164-14-367

[…] detection tool which is capable of improved detection using parent–child trios, but is not designed to detect UPD or partial copy number states []. Other HMM-based approaches, including PSCN, genoCN, MixHMM, and GPHMM, can detect CNVs and UPD events in tumor/normal mixtures and are thus capable of detecting mosaic changes at a certain level of resolution [-]. A Bayesian-based algorithm, gBPCR, als […]


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MixHMM institution(s)
Department of Pathology, Yale University School of Medicine, New Haven, CT, USA

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