MixTreEM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MixTreEM
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Tool usage distribution map

This map represents all the scientific publications referring to MixTreEM per scientific context
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MixTreEM specifications

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Unique identifier OMICS_13052
Name MixTreEM
Alternative name Mixture of Trees using Expectation Maximization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Gene families sequences
Output data Synthetic gene families as species tree
Operating system Unix/Linux, Windows
Programming languages C++
Parallelization MPI
Computer skills Advanced
Stability Stable
Source code URL http://prime.scilifelab.se/mixtreem/downloads/mixtreem_source.tar.gz
Maintained Yes

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Maintainer


  • person_outline Jens Lagergren

Publication for Mixture of Trees using Expectation Maximization

MixTreEM citation

library_books

Probabilistic inference of lateral gene transfer events

2016
BMC Bioinformatics
PMCID: 5123345
PMID: 28185583
DOI: 10.1186/s12859-016-1268-2

[…] ion [, ]. Species-tree aware methods are sensitive to errors in reconstructed species trees; however, resources such as TimeTree [] and recent species tree reconstruction methods, such as Phyldog and MixTreEM [, ], appears to be sufficiently reliable.For future work, extending the model to incorporate even more biological knowledge is of interest. In particular, being able to distinguish incomplet […]


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MixTreEM institution(s)
School of Computer Science and Communication, Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden; Department of Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, Espoo, Finland; School of Computer Science and Communication, Science for Life Laboratory, Swedish e-Science Research Center, KTH Royal Institute of Technology, Stockholm, Sweden
MixTreEM funding source(s)
Swedish e-Science Research Center, The Swedish Research Council (2010-4757), University of Engineering and Technology, Peshawar, Pakistan and the Academy of Finland (Finnish Centre of Excellence in Computational Inference Research COIN, 251170)

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