MLSeq specifications

Information


Unique identifier OMICS_11382
Name MLSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data MLSeq package requires a count table, which contains the number of reads mapped to each transcript for each sample. This kind of count data can be obtained from RNA sequencing experiments, also from other sequencing experiments such as DNA or ChIP sequencing.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.20.3
Stability Stable
Requirements
limma, methods, plyr, Biobase, utils, testthat, BiocStyle, SummarizedExperiment, edgeR, ggplot2, DESeq2, knitr, foreach, xtable, VennDiagram, pamr, caret, sSeq
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Gokmen Zararsiz

Publication for MLSeq

MLSeq institution(s)
Turcosa Analytics Solutions Ltd Co, Kayseri, Turkey; Department of Biostatistics, Erciyes University, Kayseri, Turkey; Department of Biostatistics, Hacettepe University, Ankara, Turkey; Department of Biology, Istanbul University, Istanbul, Turkey; Department of Physics, Marmara University, Istanbul, Turkey
MLSeq funding source(s)
Supported by the Research Fund of Erciyes University [TDK-2015-5468].

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