MM-align statistics

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MM-align specifications

Information


Unique identifier OMICS_08943
Name MM-align
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data PDB format
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yang Zhang <>

Information


Unique identifier OMICS_08943
Name MM-align
Interface Web user interface
Restrictions to use None
Input data PDB format
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yang Zhang <>

Publication for MM-align

MM-align in publications

 (3)
PMCID: 5751226
PMID: 29206185
DOI: 10.3390/ijms18122623

[…] demonstrates the high quality of the initial tertiary structure prediction for this target sequence. the superposition of the complex shown in b generated a tm-score of 0.42037 when aligned using mm-align []. in d the predicted structure shows a disordered region that was predicted to form the interaction site for the dimer. in c, the observed structure shows that the disordered regions […]

PMCID: 5585393
PMID: 28874689
DOI: 10.1038/s41598-017-09654-8

[…] of 111 common homo-oligomeric targets. the models produced by each server are compared to the native structure using qs-score and a structural-similarity based measure, tm-score, obtained using mm-align after the subunits were correctly mapped and chains renamed. the method we propose outperforms the other servers in terms of interface quality (qs-score) and in global structural similarity […]

PMCID: 3374795
PMID: 22719985
DOI: 10.1371/journal.pone.0038913

[…] a systemic study of a representative set of protein-protein complex structures in the pdb, with all structural pairs compared by a recently developed protein complex structural alignment algorithm, mm-align . the complex structure similarity is evaluated by a newly defined reciprocal tm-score, rtm-score, which is sensitive to both the monomeric structure similarity of the individual subunits […]


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MM-align institution(s)
Center for Bioinformatics and Department of Molecular Bioscience, University of Kansas, Lawrence, KS, USA
MM-align funding source(s)
Alfred P. Sloan Foundation; NSF Career Award (DBI 0746198); and the National Institute of General Medical Sciences (R01GM083107, R01GM084222)

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