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Protocols

MMCD specifications

Information


Unique identifier OMICS_02859
Name MMCD
Alternative name Madison-Qingdao Metabolomics Consortium Database
Restrictions to use Academic or non-commercial use
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Qiu Cui
  • person_outline John Markley

Additional information


http://mmcd.nmrfam.wisc.edu/database_help.htm

Publication for Madison-Qingdao Metabolomics Consortium Database

MMCD citations

 (38)
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Metabolomic study of human tissue and urine in clear cell renal carcinoma by LC HRMS and PLS DA

2018
Anal Bioanal Chem
PMCID: 5956006
PMID: 29658093
DOI: 10.1007/s00216-018-1059-x
call_split See protocol

[…] ification, the maximum difference allowed between calculated and observed RT was 5% for authentic standards and 45% for other metabolites. Putative identifications were also guided by searches on the Madison-Qingdao Metabolomics Consortium Database (MMCD) [] and the Human Metabolome Database (HMDB) [].Multivariate statistical analyses were performed using Metaboanalyst 3.0 []. […]

library_books

Serum proton NMR metabolomics analysis of human lung cancer following microwave ablation

2018
PMCID: 5848604
PMID: 29530051
DOI: 10.1186/s13014-018-0982-5

[…] Fourier-transformed after multiplication by an exponential window function corresponding to a line broadening of 0.5 Hz. Resonances were assigned by querying the database HMDB (http://www.hmdb.ca/), MMCD (http://mmcd.nmrfam.wisc.edu/), and were aided by the Chenomx NMR suite (version 8.0, Chenomx, Inc.). […]

library_books

Treatment Effects of Ischemic Stroke by Berberine, Baicalin, and Jasminoidin from Huang Lian Jie Du Decoction (HLJDD) Explored by an Integrated Metabolomics Approach

2017
PMCID: 5574319
PMID: 28894512
DOI: 10.1155/2017/9848594

[…] th the metabolites labelled. Twenty-six metabolites in serum and forty-two metabolites in brain extracts were identified by querying publicly accessible metabolomics databases such as Madison (http://mmcd.nmrfam.wisc.edu/) and HMDB (http://www.hmdb.ca/), aided by Chenomx NMR Suite (Version 8.1, Chenomx Inc., Edmonton, Canada). Detailed information about the metabolites is listed in Supplementary T […]

library_books

Nuclear Magnetic Resonance Based Metabolomics Approach to Evaluate the Prevention Effect of Camellia nitidissima Chi on Colitis Associated Carcinogenesis

2017
Front Pharmacol
PMCID: 5504182
PMID: 28744216
DOI: 10.3389/fphar.2017.00447

[…] Metabolites were assigned by querying some public metabolome databases such as Human Metabolome Database (Wishart et al., ), Madison-Qingdao Metabolomics Consortium Database (Cui et al., ), and commercial available software Chenomx NMR suite v.8.1 (Chenomx Inc., Edmonton, Canada), and finally confirmed by statistical total […]

library_books

Overexpression of the human DEK oncogene reprograms cellular metabolism and promotes glycolysis

2017
PLoS One
PMCID: 5448751
PMID: 28558019
DOI: 10.1371/journal.pone.0177952

[…] gned by comparing the chemical shifts and spin-spin couplings with reference spectra found in databases, such as the Human Metabolome Database (HMDB) [], the Madison metabolomics consortium database (MMCD) [], the biological magnetic resonance data bank (BMRB) [], and Chenomx® NMR Suite profiling software (Chenomx Inc. version 8.1) […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] her: Molecular Formula Searcher; MIA: Mass Isotopolome Analyzer; MID: mass isotopomer distributions; MINE: Metabolic In Silico Network Expansion Databases; MI-Pack: Metabolite Identification Package; MMCD: Madison Metabolomics Consortium Database; MMSAT: Metabolite Mass Spectrometry Analysis Tool; MoNA: MassBank of North America; MPA-RF: Model Population Analysis–Random Forests; MPEA: Metabolite P […]

Citations

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MMCD funding source(s)
Supported by National Institutes of Health grants R21 DK070297 and P41RR02301.

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