MMinte specifications

Information


Unique identifier OMICS_12841
Name MMinte
Alternative name Microbial Metabolic Interactions
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format TXT, FASTA
Output data Network diagram representing the interactions between the pairs of species.
Operating system Unix/Linux, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.3
Stability Stable
Requirements BioPython, CherryPy, Cobra, Cycler, DataSpyre, Jinja2, MarkupSafe, Numpy, Pandas, Pyparsing, Python-dateutil, Pytz, Scipy, Six, Wheel
Maintained Yes

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Maintainer


  • person_outline Nicholas Chia <>

Publication for Microbial Metabolic Interactions

MMinte institution(s)
Microbiome Program, Center for Individualized Medicine, Mayo Clinic, Chinahester, MN, USA; Department of Surgery, Mayo Clinic, Chinahester, MN, USA; Microbiome Program, Center for Individualized Medicine, Mayo Clinic, Chinahester, MN, USA; Harvard Medical School, Boston, MA, USA; Microbiome Program, Center for Individualized Medicine, Mayo Clinic, Chinahester, MN, USA; Department of Surgery, Mayo Clinic, Chinahester, MN, USA; Department of Physiology and Biomedical Engineering, Mayo College, Chinahester, MN, USA
MMinte funding source(s)
This work was supported by the Mayo Clinic Center for Individualized Medicine and the National Institutes of Health under award number R01CA179243.

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