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Citations per year

Number of citations per year for the bioinformatics software tool MMM
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Tool usage distribution map

This map represents all the scientific publications referring to MMM per scientific context
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Protocols

MMM specifications

Information


Unique identifier OMICS_28253
Name MMM
Alternative name Multiple Mapping Method
Interface Web user interface
Restrictions to use None
Input data A target sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Andras Fiser

Publications for Multiple Mapping Method

MMM citations

 (13)
call_split

Distinct domains of the β1 subunit cytosolic N terminus control surface expression and functional properties of large conductance calcium activated potassium (BK) channels

2017
PMCID: 5448097
PMID: 28373283
DOI: 10.1074/jbc.M116.769505
call_split See protocol

[…] he WHAT-IF () and SWISS-MODEL structural assessment () web servers. This predicted wild-type model was then used as a template in the homology modeling of the mutated N-terminal β1 peptides using the Multiple Mapping Method (MMM) web server (). MMM combines the best alternatively aligned fragments along the peptide into a final alignment used for the model construction. All the predicted mutant mo […]

library_books

Infection derived lipids elicit an immune deficiency circuit in arthropods

2017
Nat Commun
PMCID: 5316886
PMID: 28195158
DOI: 10.1038/ncomms14401

[…] s between XIAP and Bendless. BLAST searches using Bendless (B7PKK7) and XIAP (B7PF95) sequences were evaluated against the PDB. Predicted structures with the highest homology where modelled using the Multiple Mapping Method and Phyre2 programs. The software ZDOCK was used to model the XIAP-Bendless complex. Top ten predictions, which localize to a single interface were shown. Visualization was mad […]

library_books

Polyglutamine Tract Expansion Increases S Nitrosylation of Huntingtin and Ataxin 1

2016
PLoS One
PMCID: 5033456
PMID: 27658206
DOI: 10.1371/journal.pone.0163359

[…] The MMM server (http://manaslu.aecom.yu.edu/MMM) [] was used to create the molecular models for the A, B, C and D clusters of HEAT repeats (Tartari et al., 2008) [] using the crystal structure of the firs […]

library_books

Atmospheric drying as the main driver of dramatic glacier wastage in the southern Indian Ocean

2016
Sci Rep
PMCID: 5007672
PMID: 27580801
DOI: 10.1038/srep32396

[…] dels (AOGCMs, sometimes coupled to a carbon cycle model) initialized from the end of freely evolving simulations of the historical period. Outputs from historical simulations, and a multi-model mean (MMM) were computed from 49 different versions of different models (interpolated on ERA-40 grid) (, ).Projected precipitation and surface temperature linear trends from 2006 to 2100 for the CMIP5 MMM a […]

library_books

Identification of Plasmodium falciparum Translation Initiation eIF2β Subunit: Direct Interaction with Protein Phosphatase Type 1

2016
Front Microbiol
PMCID: 4881399
PMID: 27303372
DOI: 10.3389/fmicb.2016.00777

[…] icomplexa eIF2β lack the N-terminus, it presents the two main PP1 binding domains found in Mammals and Amphibians (FxxR/KxR/K and R/KxV/IxF/W), which suggests a conserved function (Figure ).Using the Multiple Mapping Method (http://www.fiserlab.org/servers/M4T), we observed that the putative tertiary structure of P. falciparum eIF2β (60–201 residues) was similar to the architecture of aIF2β of P. […]

library_books

In vivo assembly of DNA fragments in the moss, Physcomitrella patens

2016
Sci Rep
PMCID: 4850407
PMID: 27126800
DOI: 10.1038/srep25030

[…] scarded and the pellet was washed twice with protoplast wash solution (8.5% mannitol, 10 mM CaCl2). Protoplast density was measured using a hemocytometer, followed by centrifuging and resuspension in MMM solution (9.1% D-mannitol, 10% MES and 15mM MgCl2) giving a protoplast concentration of 1.6 × 106 cells/mL. 300 μL of protoplast suspension and 300 μL of PEG solution were added to a 15 mL tube co […]


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MMM institution(s)
Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine, Bronx, New York, NY, USA
MMM funding source(s)
Supported by the Howard Hughes Medical Institute, the Seaver Foundation, and NIH with GM62519-04.

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