MmPalateMiRNA specifications

Information


Unique identifier OMICS_00788
Name MmPalateMiRNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.30.0
Stability Stable
Requirements
AnnotationDbi, limma, methods, RColorBrewer, Biobase, lattice, cluster, multtest, vsn, RSQLite, DBI, R(>=2.13.0), xtable, statmod, GOstats, graph, Category, org.Mm.eg.db, microRNA, targetscan.Mm.eg.db, clValid, class, latticeExtra
Maintained Yes

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Documentation


Publication for MmPalateMiRNA

MmPalateMiRNA in publication

PMCID: 4583626
PMID: 26484231
DOI: 10.1016/j.gdata.2015.05.005

[…] data (i.e. expression was not detected in seven or more samples, which excluded 100 micrornas), missing values from remaining probes were imputed using r function imputeknn in bioconductor package mmpalatemirna (14.5% of values were imputed) . a median sweep was performed to normalize delta ct values by subtracting the global median for each array. box plots of raw and normalized values […]


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MmPalateMiRNA institution(s)
Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY, USA

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