MMSEQ specifications


Unique identifier OMICS_01280
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ+FASTA
Operating system Unix/Linux, Mac OS
Programming languages C, C++, R, Ruby, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.10
Stability Stable
Requirements Boost C++ libraries, GNU Scientific Library, Armadillo C++ linear algebra library, SAMtools library
Maintained Yes



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  • person_outline Ernest Turro <>

MMSEQ articles

MMSEQ citation

PMCID: 5844893

[…] of mammalian transcriptomes. for differential expression analysis, cummerbund was employed to perform statistical analyses of gene expression profiles. for allele-specific expression analysis, mmseq was then implemented to estimate allelic imbalance and deconvolve the alignment of reads to diploid transcripts derived from diploid genomic sequences and ensembl gene annotation 74 following […]

MMSEQ institution(s)
Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant, Cambridge, UK; Department of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal QC, Canada
MMSEQ funding source(s)
Supported by Cancer Research UK grant C14303/A10825, the Cambridge Biomedical Research Centre, by UK BBSRC grant BB/E020372/1 and a Team Grant from the Fonds de recherche du Quebec—Nature et technologies.

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