MMseqs specifications

Information


Unique identifier OMICS_11001
Name MMseqs
Alternative names Many-against-Many sequence searching, MMseqs2
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Johannes Soeding <>
  • person_outline Martin Steinegger <>

Additional information


A GUI version is available at https://github.com/soedinglab/MMseqs2-App https://github.com/soedinglab/MMseqs2/wiki

Information


Unique identifier OMICS_11001
Name MMseqs
Alternative names Many-against-Many sequence searching, MMseqs2
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Download


Documentation


Maintainers


  • person_outline Johannes Soeding <>
  • person_outline Martin Steinegger <>

Additional information


A GUI version is available at https://github.com/soedinglab/MMseqs2-App https://github.com/soedinglab/MMseqs2/wiki

Publications for Many-against-Many sequence searching

library_books

MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.

2016 Bioinformatics
PMID: 26743509
MMseqs institution(s)
Quantitative and Computational Biology group, Max-Planck Institute for Biophysical Chemistry, Gottingen, Germany; Department of Chemistry, Seoul National University, Seoul, Korea
MMseqs funding source(s)
Supported by the European Research Council in the framework of its Horizon 2020 Framework Programme for Research and Innovation (grant “VirusX”, project no. 685778).

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