MNase-seq data analysis bioinformatics software tools

The technology of micrococcal nuclease (MNase) digestion combined with high-throughput sequencing (MNase-seq) is a powerful method to map the genome-wide distribution of nucleosome occupancy (Mavrich et al., 2008; Schones et al., 2008; Jiang and Pugh, 2009). Source text: Chen et…

MNase-seq analysis steps

MNase-seq data analysis bioinformatics software tools

Most Recent Tools

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CAM
Desktop

CAM

Performs quality control for micrococcal nuclease digestion followed by…

Performs quality control for micrococcal nuclease digestion followed by high-throughput sequencing (MNase-seq) data. CAM permits users to compare their data to a set of 268 historical MNase-seq…

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SeqPlots
Desktop

SeqPlots

Visualizes next-generation sequencing (NGS) signals and sequence motif…

Visualizes next-generation sequencing (NGS) signals and sequence motif densities along genomic features using average plots and heatmaps. It can also calculate sequence motif density profiles from…

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Pasha
Desktop

Pasha Preprocessing of Aligned Sequences from HTS Analyses

An R package designed for processing aligned reads from chromatin-oriented…

An R package designed for processing aligned reads from chromatin-oriented high-throughput sequencing experiments. Pasha allows easy manipulation of aligned reads from short-read sequencing…

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DFilter
Desktop

DFilter

A detection algorithm that identifies regulatory features in ChIP-seq,…

A detection algorithm that identifies regulatory features in ChIP-seq, DNase-seq and FAIRE-seq data more accurately than assay-specific algorithms. The mathematical formalism underlying DFilter…

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