MNase-seq data analysis bioinformatics software tools

MNase-seq analysis steps

The technology of micrococcal nuclease (MNase) digestion combined with high-throughput sequencing (MNase-seq) is a powerful method to map the genome-wide distribution of nucleosome occupancy (Mavrich et al., 2008; Schones et al., 2008; Jiang and Pugh, 2009). Source text: Chen et…

MNase-seq data analysis bioinformatics software tools

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DFilter
Desktop

DFilter

A detection algorithm that identifies regulatory features in ChIP-seq,…

A detection algorithm that identifies regulatory features in ChIP-seq, DNase-seq and FAIRE-seq data more accurately than assay-specific algorithms. The mathematical formalism underlying DFilter…

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SeqPlots
Desktop

SeqPlots

Visualizes next-generation sequencing (NGS) signals and sequence motif…

Visualizes next-generation sequencing (NGS) signals and sequence motif densities along genomic features using average plots and heatmaps. It can also calculate sequence motif density profiles from…

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