MobilomeFINDER specifications

Information


Unique identifier OMICS_08268
Name MobilomeFINDER
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Publication for MobilomeFINDER

MobilomeFINDER in publications

 (7)
PMCID: 4891358
PMID: 27375573
DOI: 10.3389/fmicb.2016.00849

[…] (). short read mapping to reference sequences and de novo assembly were performed using the platform ugene (). initial identification of gis among k. pneumoniae strains was performed using the mobilomefinder web platform ()., statistical analyses were performed using the prism 6 platform. one-way and two-way anova tests were used to compare single or multiple datasets, respectively. […]

PMCID: 4887561
PMID: 27293536
DOI: 10.1016/j.csbj.2016.05.001

[…] ., the trnacc method utilizes alignments from mauve to find gis between a conserved trna gene and a conserved downstream flanking region across the selected genomes. it was later integrated into mobilomefinder , an integrative web-based application to predict gis with both computational and experimental methods. complementary analysis is also incorporated in trnacc to provide additional […]

PMCID: 4492584
PMID: 26147218
DOI: 10.1371/journal.pone.0131112

[…] was built with the densitree software (htpp://www.cs.auckland.ac.nz)., to identify putative genomic islands based on conserved flanking blocks (i.e., trnacc), we used the interactive online software mobilomefinder [] with the islandscreen tool, available at website: http://www.mml.sjtu.edu.cn/mobilomefinder, as the input for the mauve, version 2.3.1, files. the position and number of trnas […]

PMCID: 4897231
PMID: 27433520
DOI: 10.1155/2014/732857

[…] close species as reference genomes and identifies subsequences that are unique in the query genomes and treats them to be gis. the implemented programs of this approach include islandpick [] and mobilomefinder []. the integrative approach uses the prediction results of the above programs to obtain census gis. tools of using such approaches include egid [] and islandviewer []. […]

PMCID: 4009839
PMID: 24822029
DOI: 10.2174/1389202915999140328163125

[…] a global gc content distribution, in contrast to window-based methods, and therefore it is useful in identifying isochore structure, and in identifying global gc content variations in the genome., mobilomefinder is a useful bioinformatics server that facilitates high-throughput in-silico and experimental discovery of bacterial mobile regions []. the analysis tools for trna/tmrna gene contents […]


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MobilomeFINDER institution(s)
Laboratory of Microbial Metabolism and School of Life Science and Biotechnology, Shanghai Jiaotong University, China

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