MOCAT specifications

Information


Unique identifier OMICS_01517
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Single- and paired-end reads
Input format FastQ
Biological technology Illumina
Operating system Unix/Linux
Programming languages Perl, Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Peer Bork <>

MOCAT articles

MOCAT citation

2017
PMCID: 5474096

[…] sequencing cycles), and bases with a quality score lower than 20. lastly, a size threshold of 95 bp was imposed on the entire read dataset. reads were assembled using the soapdenovo software in the mocat pipeline. the assembled contigs were then confirmed to be viral in origin using the virsorter software with default settings (roux et al., 2015a; roux et al., 2015b). the viral fraction […]

MOCAT institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia; Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, Heidelberg, Germany; Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg, Germany; Max Delbrück Centre for Molecular Medicine, Berlin, Germany
MOCAT funding source(s)
This work was supported by the European Research Council CancerBiome project [grant number 268985], the International Human Microbiome Standards project [grant number HEALTH-2010-261376], and the MetaCardis project [grant number HEALTH-2012-305312].

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