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Model comparison and matching software tools | Metabolic engineering

Genome-scale reconstructions and models, as collections of genomic and metabolic information, provide a useful means to compare organisms. Comparison requires that models are similarly notated to pair shared components.Source text:(Sauls and…
BiVeS
Desktop

BiVeS Biomodel Version control System

Assists users for difference detection in models of biological systems. BiVeS…

Assists users for difference detection in models of biological systems. BiVeS is a software library that improves the detection of differences between versions of models in SBML or CellML format. It…

semanticSBML
Web
Desktop

semanticSBML

Allows users to set and modify annotations easily. semanticSBML is a…

Allows users to set and modify annotations easily. semanticSBML is a comprehensive software combining model annotation, checking and building as well as merging. It helps the human modeller to detect…

modelBorgifier
Desktop

modelBorgifier

Facilitates comparing and combining of openCOBRA Toolbox compatible…

Facilitates comparing and combining of openCOBRA Toolbox compatible genome-scale metabolic reconstructions. modelBorgifier assists users in the task of reconciling dissimilarly annotated models in an…

PINT
Web

PINT Pathways INtegration Tool

Provides an integrated environment for users to perform functions that are…

Provides an integrated environment for users to perform functions that are required for biological pathways integration (BPI). PINT is a website that provides two useful features, a tolerant…

Semantic…
Web

Semantic propagation

Applies models and similarity scores to a wide range of network. Semantic…

Applies models and similarity scores to a wide range of network. Semantic propagation is a general approach that can be combined with different model matching algorithms. It can be carried out in two…

ModeRator
Desktop

ModeRator

Analyses large biochemical networks by comparing reactions and involved…

Analyses large biochemical networks by comparing reactions and involved reactants. ModeRator detects duplicate reactions in a single model. This software works with SBML files and COBRA files. It…

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