Molecular phylogenetics is a powerful tool for inferring both the process and pattern of evolution from genomic sequence data. Statistical approaches, such as maximum likelihood and Bayesian inference, are now established as the preferred methods of inference. The choice of…
jModelTest
Web
Desktop

jModelTest

A bioinformatic tool for choosing among different models of nucleotide…

A bioinformatic tool for choosing among different models of nucleotide substitution. The program implements five different model selection strategies, including hierarchical and dynamical likelihood…

SPIn
Web

SPIn model Selection in Phylogenetics based on algebraic INvariants

Uses linear invariants defining the spaces of all phylogenetic mixtures under a…

Uses linear invariants defining the spaces of all phylogenetic mixtures under a given model. SPIn is a novel approach to select an evolutionary model in phylogenetics. This tool requires no input…

Phylo-Node
Desktop

Phylo-Node

Allows the user to go from sequence retrieval to phylogeny reconstruction.…

Allows the user to go from sequence retrieval to phylogeny reconstruction. Phylo-Node can execute the analysis and process the resulting outputs from a suite of software options that provides tools…

ProtTest
Web
Desktop

ProtTest

A bioinformatic tool for the selection of best-fit models of amino acid…

A bioinformatic tool for the selection of best-fit models of amino acid replacement for the data at hand. ProtTest makes this selection by finding the model in the candidate list with the smallest…

ModelOMatic
Desktop

ModelOMatic

Designs for rapid phylogenetic model selection on protein coding genes.…

Designs for rapid phylogenetic model selection on protein coding genes. ModelOMatic is fast, with most families from PANDIT taking fewer than 150 s to complete, and should therefore be easily…

GeLL
Desktop

GeLL

A Java library that lets users use text to quickly and efficiently define novel…

A Java library that lets users use text to quickly and efficiently define novel forms of discrete data and create new substitution models that describe how those data change on a phylogeny. GeLL…

ModelGenerator
Desktop

ModelGenerator

Selects optimal amino acid and nucleotide substitution models from Fasta or…

Selects optimal amino acid and nucleotide substitution models from Fasta or Phylip alignments. ModelGenerator supports 56 nucleotide and 96 amino acid substitution models. It uses the Akaike…

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