Desktop app
Phylo-Node Phylo-Node

Phylo-Node

A scalable toolkit that allows the user to go from sequence retrieval to…

A scalable toolkit that allows the user to go from sequence retrieval to phylogeny reconstruction. Phylo-Node can execute the analysis and process the resulting outputs from a suite of software…

Web app
Desktop app
ProtTest ProtTest

ProtTest

A bioinformatic tool for the selection of best-fit models of amino acid…

A bioinformatic tool for the selection of best-fit models of amino acid replacement for the data at hand. ProtTest makes this selection by finding the model in the candidate list with the smallest…

Web app
model Selection in… model Selection in Phylogenetics based on…

SPIn model Selection in Phylogenetics based on algebraic INvariants

Uses linear invariants defining the spaces of all phylogenetic mixtures under a…

Uses linear invariants defining the spaces of all phylogenetic mixtures under a given model. SPIn is a novel approach to select an evolutionary model in phylogenetics. This tool requires no input…

Desktop app
ModelGenerator ModelGenerator

ModelGenerator

A model selection program that selects optimal amino acid and nucleotide…

A model selection program that selects optimal amino acid and nucleotide substitution models from Fasta or Phylip alignments. ModelGenerator supports 56 nucleotide and 96 amino acid substitution…

Desktop app
ModelOMatic ModelOMatic

ModelOMatic

Designs for rapid phylogenetic model selection on protein coding genes.…

Designs for rapid phylogenetic model selection on protein coding genes. ModelOMatic is fast, with most families from PANDIT taking fewer than 150 s to complete, and should therefore be easily…

Web app
Desktop app
jModelTest jModelTest

jModelTest

A bioinformatic tool for choosing among different models of nucleotide…

A bioinformatic tool for choosing among different models of nucleotide substitution. The program implements five different model selection strategies, including hierarchical and dynamical likelihood…

Desktop app
GeLL GeLL

GeLL

A Java library that lets users use text to quickly and efficiently define novel…

A Java library that lets users use text to quickly and efficiently define novel forms of discrete data and create new substitution models that describe how those data change on a phylogeny. GeLL…

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