MoDEL specifications


Unique identifier OMICS_06520
Name MoDEL
Alternative name Molecular Dynamics Extended Library
Restrictions to use None
Maintained Yes

Publication for Molecular Dynamics Extended Library

MoDEL citations


Gaussian network model can be enhanced by combining solvent accessibility in proteins

Sci Rep
PMCID: 5548781
PMID: 28790346
DOI: 10.1038/s41598-017-07677-9

[…] omposed of 3225 chains with a local sequence identity of 25% with each other and also with the sequences from the PDB972 dataset.Moreover, we created another independent dataset extracted from MoDEL (Molecular Dynamics Extended Library), which is a database of protein trajectories obtained by means of state-of-art atomistic molecular dynamics simulations in near-physiological conditions. The aim o […]


PMG: online generation of high quality molecular pictures and storyboarded animations

Nucleic Acids Res
PMCID: 1933120
PMID: 17478496
DOI: 10.1093/nar/gkm277

[…] more possibilities: model animation can be used for NMR data, but also for visualization of docking results as produced for instance by the ClusPro () server, molecular dynamics as accessible in the Molecular Dynamics Extended Library (, molecular motions produced from normal mode analysis [see (,) for some examples] or from morphing two structures as stored in the Data […]

MoDEL institution(s)
Joint IRB-BSC Computational Biology Programme, Institute of Research in Biomedicine, Parc Científic de Barcelona, Barcelona, Spain

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