modelBorgifier protocols

View modelBorgifier computational protocol

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modelBorgifier specifications

Information


Unique identifier OMICS_20096
Name modelBorgifier
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Joerg Buescher <>

Additional information


https://opencobra.github.io/cobratoolbox/latest/modules/modelBorgifier.html

Publication for modelBorgifier

modelBorgifier in pipeline

2016
PMCID: 4859558
PMID: 27152931
DOI: 10.1371/journal.pone.0155038

[…] associations and expanded each reaction into several reactions, each under the control of only one enzyme. we reconciled the reference network’s metabolite and reaction abbreviations using the modelborgifier toolbox []. we used irc1080 as the template model and subsequently compared ijn678 and knoop to the template model., starting from the p. tricornutum genome annotation phatr2 (phatr3 […]


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modelBorgifier in publication

PMCID: 4859558
PMID: 27152931
DOI: 10.1371/journal.pone.0155038

[…] associations and expanded each reaction into several reactions, each under the control of only one enzyme. we reconciled the reference network’s metabolite and reaction abbreviations using the modelborgifier toolbox []. we used irc1080 as the template model and subsequently compared ijn678 and knoop to the template model., starting from the p. tricornutum genome annotation phatr2 (phatr3 […]


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modelBorgifier institution(s)
BRAIN Aktiengesellschaft, Microbial Production Technologies, Platform for Quantitative Biology and Sequencing, Zwingenberg, Germany
modelBorgifier funding source(s)
Supported by German Academic Exchange Service (DAAD) through a RISE professional scholarship.

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