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ModelEvaluator specifications

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Unique identifier OMICS_11953
Name ModelEvaluator
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Publication for ModelEvaluator

ModelEvaluator citations

 (4)
library_books

A large scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11

2015
BMC Bioinformatics
PMCID: 4619059
PMID: 26493701
DOI: 10.1186/s12859-015-0775-x

[…] bed above.The pool of predicted models was evaluated by 14 quality assessment (QA) methods (e.g., MULTICOM-NOVEL_QA – a new in-house single QA method, ModFOLDclust2 [], ProQ2 [], Pcons [], APOLLO [], ModelEvaluator [], ModelCheck2 – an improved version of ModelEvaluator, QApro – a weighted combination of ModelEvaluator and APOLLO, SELECTpro [], Dope [], DFIRE2 [], OPUS_PSP [], RWplus [], RF_CB_SRS […]

library_books

Large scale model quality assessment for improving protein tertiary structure prediction

2015
Bioinformatics
PMCID: 4553833
PMID: 26072473
DOI: 10.1093/bioinformatics/btv235

[…] score () and RF_CB_SRS_OD score (); ProQ2 (); Model check2 method produced by an improved version of ModelEvaluator (); a recalibrated SELECTpro energy (); Dope (); DFIRE2 (); OPUS_PSP (); Rwplus (); ModelEvaluator () and RF_CB_SRS_OD (). The multi-model QA methods include ModFOLDclust2 (); Pcons (); APPOLLO (); QApro—a weighted combination of ModelEvaluator and APOLLO (). The details of each meth […]

library_books

Predicting Protein Model Quality from Sequence Alignments by Support Vector Machines

2013
PMCID: 4705550
PMID: 26752865
DOI: 10.4172/jpb.S9-001

[…] cations []. Accurate quality assessment of protein models can help rank a pool of candidate models predicted for a given query protein. A number of model quality assessment methods and tools, such as ModelEvaluator [], APOLLO [], QMEAN [], have been developed. These methods evaluate the quality of models based on the structural information extracted from protein models, without considering the sou […]

library_books

A conformation ensemble approach to protein residue residue contact

2011
BMC Struct Biol
PMCID: 3200154
PMID: 21989082
DOI: 10.1186/1472-6807-11-38

[…] predict the quality of each model and then removed those models from the ensemble whose predicted quality was below a set threshold. More specifically, we used the predicted GDT-TS value generated by ModelEvaluator and if it was below 30, the model was removed from the ensemble. We briefly mention here that GDT-TS is a standard means of assessing a model's overall quality. It is calculated by perf […]


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ModelEvaluator institution(s)
Computer Science Department, Informatics Institute, University of Missouri, Columbia, MO, USA
ModelEvaluator funding source(s)
MU Faculty startup Grant, MU Research Board Grant, MU Bioinformatics Consortium.

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