ModelOMatic specifications


Unique identifier OMICS_11548
Name ModelOMatic
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Simon Whelan <>

Publication for ModelOMatic

ModelOMatic in publication

PMCID: 5904100
PMID: 29666365
DOI: 10.1038/s41467-018-03861-1

[…] on g-ins-i, e-ins-i, msaprobs and l-ins-i for subunit b. the final alignment of concatenated cummo subunits a and b comprised 125 sequences with 595 aligned protein/codon positions. analysis with modelomatic indicated that codon models fit the data better than protein models and thus phylogenetic analyses were performed based on codon sequences. the best-fit model of codon evolution […]

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ModelOMatic institution(s)
Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden; Faculty of Life Sciences, University of Manchester, Manchester, UK
ModelOMatic funding source(s)
This work was supported by the UK Biotechnology and Biological Sciences Research Council on grant codes [BB/H000445/1 and BB/H006818/1] and the NERC CASE PhD studentship, in collaboration with EMBL-EBI, UK.

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