MoDIL statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

MoDIL specifications

Information


Unique identifier OMICS_00066
Name MoDIL
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2
Stability Beta
Source code URL http://compbio.cs.toronto.edu/modil/src/modil_beta_v2.tar.gz
Maintained Yes

Versioning


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Maintainers


  • person_outline Michael Brudno <>
  • person_outline Seunghak Lee <>

Publication for MoDIL

MoDIL in publications

 (2)
PMCID: 5115803
PMID: 27861560
DOI: 10.1371/journal.pone.0166721

[…] information (in sam and vcf standard) to distinguish reads carrying different alleles, which is necessary for subsequent haplotype assembly. however, existing sv callers (e.g., breakdancer, modil, or variationhunter) cannot supply the information required to distinguish reads for sv or non-sv haplotypes, and the accuracies of reported svs and boundaries are unsatisfactory [, ]. […]

PMCID: 4479793
PMID: 26161383
DOI: 10.3389/fbioe.2015.00092

[…] maximum standard deviation value is fixed and events spanning the same locus, resulting in a small value of the insert size standard deviation, may be missed., distribution-based approaches, e.g., modil (lee et al., ), exploit the local distribution of all the mappings spanning a particular location on the genome. a read cluster is generated when the local distribution is shifted in respect […]


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MoDIL institution(s)
Department of Computer Science, University of Toronto, Toronto, ON, Canada; School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Department of Genome Sciences, University of Washington and the Howard Hughes Medical Institute, Seattle, WA, USA; Banting and Best Department of Medical Research, University of Toronto, Toronto, ON, Canada

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