ModLink+ specifications

Unique identifier:
OMICS_13466
Restrictions to use:
None
Input format:
FASTA
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
The following inputs are required: (i) query sequence of a protein; (ii) identifiers for interaction databases; (iii) type of extrapolation (based on fold, superfamily or family SCOP domain codes or none); and (iv) EVTE.
Output data:
The server outputs the sequences predicted to have a SCOP domain similar to that in the query. It also provides their alignments and e-values according to PSI-BLAST.
Stability:
Stable

ModLink+ support

Maintainer

  • Baldo Oliva <>

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Publications

Institution(s)

Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Parc de Recerca Biomèdica de Barcelona (PRBB), Barcelona, Spain; Structural Genomics Unit, Bioinformatics & Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain; Department of Bioengineering and Therapeutic Sciences, University of California at San Francisco, San Francisco, CA, USA; Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA; California Institute for Quantitative Biosciences, University of California at San Francisco, San Francisco, CA, USA

Funding source(s)

This work was supported by EU funding (IST-027703); Spanish Ministerio de Educación y Ciencia (MEC, PROFIT PSE0100000-2007-1, BIO2007/66670, BIO02008-0205, PROFIT PSE0100000-2007-1, FIT-350300- 2007-67 and FIT-350300-2006-42); Research program of the Barcelona Supercomputing Center (BSC); National Institutes of Health U54 GM074945, U54 RR022220 and R01 GM54762, Sandler Family Supporting Foundation, Mike Homer, Ron Conway, IBM, Intel, Netapp and Hewlett Packard.

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