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ModPred specifications

Information


Unique identifier OMICS_09201
Name ModPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Predrag Radivojac <>

Information


Unique identifier OMICS_09201
Name ModPred
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Predrag Radivojac <>

Publication for ModPred

ModPred in publications

 (4)
PMCID: 5751360
PMID: 29257115
DOI: 10.3390/ijms18122761

[…] of ptms, such as acetylation, protease digestion, ubiquitination, fatty acid acylation, and methylation, have also been observed to occur in idprs [,,,]., the analysis using the ptms annotated with modpred [], which is independent from and extends the analysis based on elms, confirms the enrichment in the number of ptm sites and the number of residues that have ptm sites. we computed […]

PMCID: 5713455
PMID: 29165363
DOI: 10.3390/ijms18112489

[…] sequences employed basic local alignment search tool (blast; https://blast.ncbi.nlm.nih.gov/blast.cgi). further domain analysis for prediction of post translational modification sites used modpred []. structural modelling of predicted proteins utilized swiss-model [,]. results of these analyses are found in . additional analysis methods are provided in and associated references […]

PMCID: 5001229
PMID: 27557078
DOI: 10.1186/s12864-016-2898-5

[…] post-translational modification (ptm) sites in regions affected by lps-induced alternative splicing. we searched known ptm sites deposited in uniprot, and we also predicted novel ones using modpred []. three alternatively spliced exons containing known ptm (phorphorylation) sites localized to three genes, abi1 (abl-interactor 1), depdc1a (dep domain-containing 1), and ybx3 (y […]

PMCID: 4910978
PMID: 27310139
DOI: 10.1371/journal.pone.0156486

[…] called anchor-indicated binding sites (aibss)., ptm sites in different protα variants were identified using a unified sequence-based predictor of 23 types of ptm sites that is available at www.modpred.org []. only sites predicted to be modified with high confidence (possessing score ≥0.9) were considered in this study., interactability of human protα/iso2 (uniprot id: p06454) was evaluated […]


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ModPred institution(s)
Department of Computer Science and Informatics, Indiana University, Bloomington, Indiana; Department of Biochemistry and Molecular Biology, Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana; Industrial Internet Laboratory, General Electric Software Center, General Electric Global Research, San Ramon, California; Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, University of South Florida, Tampa, Florida; Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, Moscow Region, Russia

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