ModRefiner specifications

Information


Unique identifier OMICS_10838
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein structure (C-alpha trace, main-chain model or full-atomic model)
Input format PDB
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Yang Zhang <>

Information


Unique identifier OMICS_10838
Interface Web user interface
Restrictions to use None
Input data Protein structure (C-alpha trace, main-chain model or full-atomic model)
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yang Zhang <>

ModRefiner article

ModRefiner citation

2014
PMCID: 4128725

[…] models of pi54 orthologues and avr-pi54 was generated by ab initio structure prediction method using i-tasser web based server (zhanglab.ccmb.med.umich.edu/i-tasser/). the structures were refined by modrefiner server (http://zhanglab.ccmb.med.umich.edu/modrefiner/). energy calculation and minimization was performed using charmm force field for 2000 steps [33] (table s2 in file s1). the potential […]

ModRefiner institution(s)
Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA
ModRefiner funding source(s)
This work was supported by a National Science Foundation Career Award (DBI 1027394) and grants from the National Institute of General Medical Sciences (GM083107 and GM084222).

ModRefiner reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ModRefiner

Related Tools