ModuLand specifications

Information


Unique identifier OMICS_12239
Name ModuLand
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.5
Stability Stable
Requirements
Cytoscape
Maintained Yes

Versioning


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Maintainer


  • person_outline Máté Szalay-Bekö <>

Publication for ModuLand

ModuLand in publications

 (16)
PMCID: 5932832
PMID: 29720234
DOI: 10.1186/s13075-018-1573-4

[…] on only those proteins identified in the proteomic analyses (non-inferred nodes) or on proteins identified in the proteomic analyses alongside their inferred interactions (inferred nodes) []. the moduland (version 2.8.3) algorithm [] was applied to the interactome networks in cytoscape version 3.0 to identify highly connected clusters of proteins (modules) that demarcate the hierarchical […]

PMCID: 5734000
PMID: 29348908
DOI: 10.1155/2017/6937194

[…] map was produced using the quantum gis 2.8 open source software package []. the louvain clustering method and smart local moving algorithm were performed using the modularity optimizer tool []. the moduland network modularization method was run on our network with the moduland plug-in of cytoscape 2.8.2 []., we built the correlation matrix and the network of the 136 health-care centers based […]

PMCID: 5520920
PMID: 28617445
DOI: 10.1038/cddis.2017.264

[…] were repeatedly confirmed by western blot analysis (). integrated computational analysis of transcriptomic, proteomic and phosphoproteomic differences employing a community clustering approach (moduland) determined the dominant elements of the interactome. a robust hierarchy of the first ten modules with respect to protein:protein (ppi) interactions was constructed. the centrality of brca2 […]

PMCID: 5307339
PMID: 28195197
DOI: 10.1038/srep42498

[…] constructed using coexpress v1.5 (pearson correlation coefficient >0.99, p < 0.05). the entire network was analyzed to find core subnetworks and nodes using two plugins of cytoscape, namely moduland and mcode. the nodes/subnetworks in the intersection of the results of these two plugins were selected for further study as previously described. the functions of lncrnas were predicted […]

PMCID: 5099911
PMID: 27824113
DOI: 10.1038/srep36572

[…] and possess combinatorial regulatory functions. to elucidate whether the “multi-gene” complexes were organized into functional compartments, we sorted the chins into multiple communities using the moduland method. the chins in the k562 and mcf7 cells consisted of 1513 and 1550 communities, respectively. among the communities that had twenty or more nodes, 67.2% (82/122 from the k562 cells) […]


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ModuLand institution(s)
Department of Medical Chemistry, Semmelweis University, Budapest, Hungary
ModuLand funding source(s)
EU [FP6-518230, TÁMOP-4.2.2/B-10/1-2010-0013 and FP7-264780]; Hungarian Scientific Research Fund [OTKA K-83314 and PD-75261]; International Human Frontiers Science Program Organization; Momentum Program of the Hungarian Academy of Sciences; and residence at the Rockefeller Foundation Bellagio Center

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