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|Interface||Graphical user interface|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline Clemens Wrzodek
Publication for ModuleMaster
Improving Collaboration by Standardization Efforts in Systems Biology
[…] The inference of regulatory networks is a challenge for many areas of research. The program ModuleMaster (Wrzodek et al., ) identifies cis-regulatory modules (CRMs) in sets of co-expressed genes based on transcription factor binding information and multivariate functional relationships betwe […]
Regulatory elements of Caenorhabditis elegans ribosomal protein genes
[…] ModuleMaster is a program that can scan sequences for individual or combinatorial matches to position weight matrices using the MATCH matrix scan algorithm [,]. Here, we used ModuleMaster to scan the […]
Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands
[…] CpG island sequences and a weight score, covering the quality of the match and the significance, based on the frequency of the actual sequence in the whole human genome is used as a feature. We used ModuleMaster to apply the PFMs to the sequences and calculate the weight scores.Splice sites (5 features). We used all four PFMs, generated from SpliceDB to identify splice sites. The four PFMs corr […]
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