ModWeb pipeline

ModWeb specifications

Information


Unique identifier OMICS_13636
Name ModWeb
Interface Web user interface
Restrictions to use License purchase required
Input data Single or multiple protein sequences
Input format TXT, FASTA
Output data Models and alignments for each input sequence
Computer skills Basic
Version 185
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Andrej Sali <>

Additional information


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Publication for ModWeb

ModWeb IN pipeline

2014
PMCID: 4016182
PMID: 24817128
DOI: 10.1371/journal.pone.0096976

[…] e. coli k-12 (uniprot codes: p44539, q9s4k9, p59407 and p0a6l4, respectively). the sequences were aligned using clustalw [22] and espript [23]. automatic homology modeling was performed through the modweb modeling server (http://salilab.org/modweb) using the e. coli nal structure as template (pdb id 2wkj). superposition of the homology models was performed with the lsq option of the coot […]

ModWeb institution(s)
Department of Bioengineering and Therapeutic Sciences, California Institute for Quantitative Biosciences, University of California at San Francisco, San Francisco, CA, USA; Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California at San Francisco, San Francisco, CA, USA; Graduate Group in Biophysics, University of California at San Francisco, CA, USA; Structural Bioinformatics Unit, Structural Biology and Chemistry department, Institut Pasteur, Paris, France; Université Paris Diderot-Paris 7, école doctorale iViv, Paris Rive Gauche, Paris, France; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Department of Molecular Biology, Skaggs Institute of Chemical Biology, The Scripps Research Institute, La Jolla, CA, USA; Life Sciences Division, Department of Molecular Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
ModWeb funding source(s)
National Institutes of Health [U54 GM094662, U54 GM094625, U54 GM093342, MINOS R01GM105404]; Sandler Family Supporting Foundation; Department of Energy Lawrence Berkeley National Lab IDAT program; European Union [FP7-IDEAS-ERC 294809].

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