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MOIRAI specifications


Unique identifier OMICS_07115
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C, Java, Perl, PHP, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
R, sqlite
Maintained Yes


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Publication for MOIRAI

MOIRAI citations


Linking FANTOM5 CAGE peaks to annotations with CAGEscan

PMCID: 5625555
PMID: 28972578
DOI: 10.1038/sdata.2017.147

[…] into a single global assembly of ‘meta-clusters’ using the same program and output in bed12 files where the score indicates the number of libraries contributing data to each meta-cluster., the moirai workflow template used to process the libraries is available as a supplemental xml file (data citation 1). moirai enabled the design of a complete data processing pipeline based […]


High resolution promoter map of human limbal epithelial cells cultured with keratinocyte growth factor and rho kinase inhibitor

PMCID: 5460231
PMID: 28588247
DOI: 10.1038/s41598-017-02824-8

[…] sequences were removed using tagdust, and ribosomal rna sequences were removed with rrnadust. the resulting extracted cage tags were then mapped to the human genome (hg19) using bwa v0.5.9 with the moirai pipeline platform. mapped cage tags were counted with respect to the fantom5-defined cage peaks, which corresponded to promoters. when multiple cage peaks were associated with a single gene, […]


Sustained expression of MCP 1 by low wall shear stress loading concomitant with turbulent flow on endothelial cells of intracranial aneurysm

PMCID: 4862234
PMID: 27160403
DOI: 10.1186/s40478-016-0318-3

[…] by rna analyzer (rin > 9.50), the gene expression profile was obtained by rna sequence–based cage analyses. the read count, which was successfully mapped to the reference genome using the moirai workflow system [], was around 10,000,000, enough for further analyses (table ). then, profiling differentially expressing genes (peaks in rna sequence mapped to the reference genome) […]

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MOIRAI institution(s)
RIKEN Center for Life Science Technologies (CLST), Riken Yokohama Institute, Tsurumi-ku, Yokohama, Kanagawa, Japan

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