Moksiskaan statistics

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Citations per year

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Popular tool citations

chevron_left Gene regulatory network inference Protein-protein interaction prediction Signaling pathways chevron_right
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Tool usage distribution map

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Associated diseases

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Moksiskaan specifications

Information


Unique identifier OMICS_03436
Name Moksiskaan
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License Apache License version 2.0, GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Moksiskaan

Moksiskaan in publications

 (2)
PMCID: 4424448
PMID: 25928379
DOI: 10.1186/s12885-015-1265-2

[…] to construct sample-specific networks we take advantage of publicly available databases: pathway commons [], wikipathways [] and pina []. to systematically use these sources (step 1 figure ), we use moksiskaan database, which allows making networks based on gene lists []. moksiskaan provides many useful application programming interfaces (apis) to integrate information of connectivity […]

PMCID: 3182572
PMID: 21969803
DOI: 10.1155/2011/307297

[…] systems biology laboratory, institute of biomedicine and genome-scale biology program at university of helsinki. dr. hautaniemi and dr. laakso have implemented a computational platform (moksiskaan) that is now able to generate hypothetical pathways for a set of genes or proteins as well as to estimate their activation statuses using regulation information in pathway repositories. […]


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Moksiskaan institution(s)
Computational Systems Biology Laboratory, Institute of Biomedicine and Genome-Scale Biology Program, University of Helsinki, 00014 University of Helsinki, Finland

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