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MOLE

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A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties.

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2 user reviews

2 user reviews

Sayoni Das's avatar image Sayoni Das's country flag

Sayoni Das

Very useful tool to identify tunnels in proteins

Michal Otyepka's avatar image Michal Otyepka's country flag

Michal Otyepka

Great, easy to use, uptodate tool

MOLE forum

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MOLE versioning

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MOLE classification

MOLE specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Version:
2.0
Maintained:
Yes

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0 user reviews

0 user reviews

No review has been posted.

MOLE forum

tutorial arrow
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Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

MOLE classification

MOLE specifications

Interface:
Web user interface
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Version:
2.0
Maintained:
Yes

Credits

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Publications

Institution(s)

Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University Olomouc, Olomouc, Czech Republic

Funding source(s)

This work was supported by the Czech Science foundation (GD301/09/H004, 303/09/1001, P303/12/P019, P208/12/G016), the Ministry of Education of the Czech Republic (ME 08008), the Palacky University (Student Project PrF_2012_028), the European Community's Seventh Framework Program from the Operational Program Research and Development for Innovations-European Regional Development Fund (CZ.1.05/2.1.00/03.0058, CZ.1.05/1.1.00/02.0068), the ‘Capacities’ specific program (Contract No. 286154), the European Social Fund (CZ.1.07/2.3.00/20.0017), and by a PhD. Talent program by Brno City Municipality.

Link to literature

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