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Computes and displays sequence and species relatedness. MoDMaps3D is an alignment-free web-tool using approximated information distance (AID) to quantify the pairwise differences in oligomer composition for all input genomic sequences, and visualizes the inter-relationships thus obtained as an interactive map in three-dimensional Euclidean space. MoDMaps3D can be used in different ways: (i) to explore a prebuilt map, (ii) to build a map ab initio for a new set of sequences, or (iii) add new DNA sequences to an existing map.

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MoDMaps3D classification

MoDMaps3D specifications

Unique identifier:
OMICS_19403
Interface:
Web user interface
Programming languages:
Javascript
Computer skills:
Basic
Maintained:
Yes
Name:
Molecular Distance Maps 3D
Restrictions to use:
None
License:
MIT License
Stability:
Stable

MoDMaps3D distribution

download

MoDMaps3D support

Maintainer

  • Lila Kari <>

Credits

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Publications

Institution(s)

Department of Computer Science, University of Western Ontario, London, ON, Canada; School of Computing Science, University of Waterloo, Waterloo, ON, Canada

Funding source(s)

Supported by NSERC (Natural Sciences and Engineering Research Council of Canada) Discovery Grants R2824A01.

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