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Molecular Local surface comparison MolLoc

MolLoc
Obsolete

A web server for the structural comparison of molecular surfaces. Given two structures in PDB format, the user can compare their binding sites, cavities or any arbitrary residue selection. Moreover, MolLoc allows the comparison of a query structure with a list of structures. Each comparison produces a structural alignment that maximizes the extension of the superimposition of the surfaces, and returns the pairs of atoms with similar physicochemical properties that are close in space after the superimposition. Based on this subset of atoms sharing similar physicochemical properties a new rototranslation is derived that best superimposes them. MolLoc approach is both local and surface-oriented, and therefore it can be particularly useful when testing if molecules with different sequences and folds share any local surface similarity.

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MolLoc classification

MolLoc specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
No
Restrictions to use:
None
Stability:
Stable

MolLoc support

Maintainer

This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Department of Information Engineering, University of Padova, Padova, Italy; Department of Statistics, Purdue University, West Lafayette, IN, USA; College of Computing, Georgia Institute of Technology, Atlanta, GA, USA

Link to literature

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