Generates high-quality publication-ready molecular graphics images and animations. PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. It includes visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals, molecular builder and sculptor, internal raytracer and movie generator.
Permits to interactively visualize and analyse molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. UCSF Chimera allows users to incorporate new features. It contains some extensions which permits to visualize large-scale molecular assemblies such as viral coats, and allows researchers to share a Chimera session interactively despite being at separate locales. Other extensions can be used for extend the tool capabilities.
Allows molecular-graphics, modeling and simulation. YASARA is a molecular modeling program divided into different stages: a free software and three other stages. Each stage contains the features of all the previous stages.
Consists of a graphical interface available for Gaussian 16. GaussView can assist users with the creation of Gaussian input files, the running of Gaussian calculations and the interpretation of Gaussian output. Users can build or import molecular structures of interest, set up, launch, monitor and control Gaussian calculations, and view the predicted results graphically.
Allows visualization of molecular 3D structures. MolScript is a program that generates plots of protein structures and allows several kinds of representations, including the basic wire-drawing, ball-and stick and CPK models. An important feature of the software is the atom and residue selection mechanism allowing to give a set of atoms or residues as argument to a command that produces graphical objects. MolScript can also be used for making plots of non-protein structures.