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Publication for MolliGen
Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non domesticated Ruminants?
[…] BlastP analysis was applied to search for putative enzymes involved in polysaccharide synthesis and described in other mycoplasma species (Bertin et al., , ; Gaurivaud et al., ), in the Molligen database (http://services.cbib.u-bordeaux.fr/molligen/) using a 40% protein identity cut off (Barre et al., ). A search for secondary structures of predicted glycosyltransferases was carried […]
Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum
[…] gies. High-quality filtered reads were assembled using CLC and ABySS workbenches. The annotation was automatically performed by RAST/SEED server () and manually improved after implementation into the MolliGen database (). The Aragorn software () was used to recognize tRNA and transfer-messenger RNA (tmRNA) genes. rRNA genes were located on the genomes using the RNAmmer 2.1 software ().The MM_26B8_ […]
Genome Sequence of Mycoplasma meleagridis Type Strain 17529
[…] curation. The RNAmmer 2.1 software () was run to verify rRNAs, and the Aragorn software () was used to predict tRNAs and transfer-messenger RNAs (tmRNAs). The annotated genome was integrated into the MolliGen database (http://cbi.labri.fr/outils/molligen/), which is dedicated to the comparative genomics of Mollicutes genomes (). Analysis of the M. meleagridis genome was supported by tools availabl […]
Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes
[…] with Clustal W . Subsequent phylogenetic analyses were conducted by using the Neighbour Joining method in Mega5 . Annotation of paralogs was resolved, when possible, by analyzing the microsynteny in MolliGen and the topology of the corresponding phylogenetic trees. […]
Comparison of the complete genome sequence of two closely related isolates of ‘Candidatus Phytoplasma australiense’ reveals genome plasticity
[…] omplete set of ORFs from OY-M, AY-WB and PAa, and each ORF from OY-M, AY-WB and PAa was compared using BLASTP against the annotated NZSb11 (SLY) genome. Searches were conducted using NCBI database or Molligen (http://cbi.labri.fr/outils/molligen/) .Sequence analysis was conducted using VectorNTI® 9.0.0 (Life Technologies, Carlsbad, CA) suite of programs or Sequencher™ 4.9 (Gene Codes Corporation […]
Characterization of Free Exopolysaccharides Secreted by Mycoplasma mycoides Subsp. mycoides
[…] Genes potentially involved in EPS biosynthetic pathways were retrieved from the molligen database and from the Carbohydrate-Active EnZymes database (CAZy) . Potential transmembrane regions were predicted by TMHMM2 . Putative functions and conserved domains of proteins encoded by […]
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