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Information


Unique identifier OMICS_03200
Name MolliGen
Restrictions to use None
Maintained Yes

Publication for MolliGen

MolliGen citations

 (12)
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Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non domesticated Ruminants?

2017
Front Microbiol
PMCID: 5447728
PMID: 28611743
DOI: 10.3389/fmicb.2017.00939
call_split See protocol

[…] BlastP analysis was applied to search for putative enzymes involved in polysaccharide synthesis and described in other mycoplasma species (Bertin et al., , ; Gaurivaud et al., ), in the Molligen database (http://services.cbib.u-bordeaux.fr/molligen/) using a 40% protein identity cut off (Barre et al., ). A search for secondary structures of predicted glycosyltransferases was carried […]

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Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum

2016
Genome Announc
PMCID: 4911479
PMID: 27313300
DOI: 10.1128/genomeA.00558-16
call_split See protocol

[…] gies. High-quality filtered reads were assembled using CLC and ABySS workbenches. The annotation was automatically performed by RAST/SEED server () and manually improved after implementation into the MolliGen database (). The Aragorn software () was used to recognize tRNA and transfer-messenger RNA (tmRNA) genes. rRNA genes were located on the genomes using the RNAmmer 2.1 software ().The MM_26B8_ […]

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Genome Sequence of Mycoplasma meleagridis Type Strain 17529

2015
Genome Announc
PMCID: 4440954
PMID: 25999574
DOI: 10.1128/genomeA.00484-15
call_split See protocol

[…] curation. The RNAmmer 2.1 software () was run to verify rRNAs, and the Aragorn software () was used to predict tRNAs and transfer-messenger RNAs (tmRNAs). The annotated genome was integrated into the MolliGen database (http://cbi.labri.fr/outils/molligen/), which is dedicated to the comparative genomics of Mollicutes genomes (). Analysis of the M. meleagridis genome was supported by tools availabl […]

library_books

Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

2014
PLoS Genet
PMCID: 4014445
PMID: 24809820
DOI: 10.1371/journal.pgen.1004363

[…] with Clustal W . Subsequent phylogenetic analyses were conducted by using the Neighbour Joining method in Mega5 . Annotation of paralogs was resolved, when possible, by analyzing the microsynteny in MolliGen and the topology of the corresponding phylogenetic trees. […]

library_books

Comparison of the complete genome sequence of two closely related isolates of ‘Candidatus Phytoplasma australiense’ reveals genome plasticity

2013
BMC Genomics
PMCID: 3750655
PMID: 23915186
DOI: 10.1186/1471-2164-14-529

[…] omplete set of ORFs from OY-M, AY-WB and PAa, and each ORF from OY-M, AY-WB and PAa was compared using BLASTP against the annotated NZSb11 (SLY) genome. Searches were conducted using NCBI database or Molligen (http://cbi.labri.fr/outils/molligen/) [].Sequence analysis was conducted using VectorNTI® 9.0.0 (Life Technologies, Carlsbad, CA) suite of programs or Sequencher™ 4.9 (Gene Codes Corporation […]

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Characterization of Free Exopolysaccharides Secreted by Mycoplasma mycoides Subsp. mycoides

2013
PLoS One
PMCID: 3711806
PMID: 23869216
DOI: 10.1371/journal.pone.0068373
call_split See protocol

[…] Genes potentially involved in EPS biosynthetic pathways were retrieved from the molligen database and from the Carbohydrate-Active EnZymes database (CAZy) . Potential transmembrane regions were predicted by TMHMM2 . Putative functions and conserved domains of proteins encoded by […]

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MolliGen institution(s)
INRA-Université de Bordeaux 2, IBVM, Bordeaux, France

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