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MolliGen specifications


Unique identifier OMICS_03200
Name MolliGen
Restrictions to use None
Maintained Yes

Publication for MolliGen

MolliGen citations


Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non domesticated Ruminants?

Front Microbiol
PMCID: 5447728
PMID: 28611743
DOI: 10.3389/fmicb.2017.00939
call_split See protocol

[…] BlastP analysis was applied to search for putative enzymes involved in polysaccharide synthesis and described in other mycoplasma species (Bertin et al., , ; Gaurivaud et al., ), in the Molligen database ( using a 40% protein identity cut off (Barre et al., ). A search for secondary structures of predicted glycosyltransferases was carried […]


Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum

Genome Announc
PMCID: 4911479
PMID: 27313300
DOI: 10.1128/genomeA.00558-16
call_split See protocol

[…] gies. High-quality filtered reads were assembled using CLC and ABySS workbenches. The annotation was automatically performed by RAST/SEED server () and manually improved after implementation into the MolliGen database (). The Aragorn software () was used to recognize tRNA and transfer-messenger RNA (tmRNA) genes. rRNA genes were located on the genomes using the RNAmmer 2.1 software ().The MM_26B8_ […]


Genome Sequence of Mycoplasma meleagridis Type Strain 17529

Genome Announc
PMCID: 4440954
PMID: 25999574
DOI: 10.1128/genomeA.00484-15
call_split See protocol

[…] curation. The RNAmmer 2.1 software () was run to verify rRNAs, and the Aragorn software () was used to predict tRNAs and transfer-messenger RNAs (tmRNAs). The annotated genome was integrated into the MolliGen database (, which is dedicated to the comparative genomics of Mollicutes genomes (). Analysis of the M. meleagridis genome was supported by tools availabl […]


Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

PLoS Genet
PMCID: 4014445
PMID: 24809820
DOI: 10.1371/journal.pgen.1004363

[…] with Clustal W . Subsequent phylogenetic analyses were conducted by using the Neighbour Joining method in Mega5 . Annotation of paralogs was resolved, when possible, by analyzing the microsynteny in MolliGen and the topology of the corresponding phylogenetic trees. […]


Comparison of the complete genome sequence of two closely related isolates of ‘Candidatus Phytoplasma australiense’ reveals genome plasticity

BMC Genomics
PMCID: 3750655
PMID: 23915186
DOI: 10.1186/1471-2164-14-529

[…] omplete set of ORFs from OY-M, AY-WB and PAa, and each ORF from OY-M, AY-WB and PAa was compared using BLASTP against the annotated NZSb11 (SLY) genome. Searches were conducted using NCBI database or Molligen ( [].Sequence analysis was conducted using VectorNTI® 9.0.0 (Life Technologies, Carlsbad, CA) suite of programs or Sequencher™ 4.9 (Gene Codes Corporation […]


Characterization of Free Exopolysaccharides Secreted by Mycoplasma mycoides Subsp. mycoides

PLoS One
PMCID: 3711806
PMID: 23869216
DOI: 10.1371/journal.pone.0068373
call_split See protocol

[…] Genes potentially involved in EPS biosynthetic pathways were retrieved from the molligen database and from the Carbohydrate-Active EnZymes database (CAZy) . Potential transmembrane regions were predicted by TMHMM2 . Putative functions and conserved domains of proteins encoded by […]


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MolliGen institution(s)
INRA-Université de Bordeaux 2, IBVM, Bordeaux, France

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